Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31882
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0183 - 23051159-23051295,23051705-23051809,23051904-230519...    37   0.008
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    28   5.1  
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312...    27   8.9  
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729...    27   8.9  
03_03_0056 + 14127721-14128021,14128122-14128343,14129213-141293...    27   8.9  

>05_05_0183 -
           23051159-23051295,23051705-23051809,23051904-23051962,
           23052620-23052688,23052892-23053154,23053367-23053431,
           23053510-23053735,23053824-23053839,23054231-23054420,
           23055384-23055399
          Length = 381

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +2

Query: 233 RCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTL 412
           R ++ K+ K    +++P    K++    M+++W EYITE   +    P+      + L+ 
Sbjct: 238 RHMSLKQHKKCGSFDLPETLRKFDLYKPMHEMWKEYITE---LTKSTPK------KQLSE 288

Query: 413 SLYKADYHGCMLTVVRSK-CPSFINKTGICIMDT 511
           +L  AD HG ++ V   K   S+    GI I DT
Sbjct: 289 TLLSADLHGALVIVAECKSASSYQGVCGIMIRDT 322


>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 317 MNKIWLEYITE---VLAMDDGVPEPNSKNWETLTLSLYKADYHGCMLTVVRSKCPSFINK 487
           + KI LE I     +L +DD   + + K WE L   L   +  GCM+ +V ++  S    
Sbjct: 506 LQKILLEKIRHKRFLLVLDDMWEDRDRKGWENLLAPLKCNEATGCMI-LVTTRRTSVARM 564

Query: 488 TG 493
           TG
Sbjct: 565 TG 566


>11_06_0554 -
           24930437-24930552,24930878-24931079,24931164-24931269,
           24931357-24931599,24932398-24932484,24932695-24932825,
           24933177-24933183,24933695-24933789
          Length = 328

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 254 KKTLRFYNIPRHSVKYEDVVQMNKIWL 334
           ++ L+ + +PRH V  E++    K W+
Sbjct: 178 QQNLQIHRLPRHEVSLEEIADNGKKWM 204


>05_03_0003 -
           7298555-7298841,7299199-7299386,7299484-7299683,
           7299774-7300038,7302403-7302512
          Length = 349

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 311 LRPRTSRCVVEYCKIEVFFSLYESNIWFFS 222
           +RP+T R   EY  +   +++   N WF+S
Sbjct: 157 VRPQTKRTYYEYTGLWHIYAILSMNAWFWS 186


>03_03_0056 +
           14127721-14128021,14128122-14128343,14129213-14129364,
           14129449-14129719,14130621-14130853
          Length = 392

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 407 TLSLYKADYHGCMLTVVRS 463
           T++L  ADY+G ML +VRS
Sbjct: 293 TVTLIYADYYGAMLKIVRS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,048,056
Number of Sequences: 37544
Number of extensions: 250417
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)