Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31882
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47935| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_6737| Best HMM Match : Rib_5-P_isom_A (HMM E-Value=9)               29   3.0  
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)                    28   4.0  
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)                  28   5.3  
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)                  27   9.2  
SB_27000| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    27   9.2  

>SB_47935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 329 WLEYITEVLAMDDGVPEPNSKNWETLTLSLYK 424
           WLE I E  A+D  VP P+S++WE  T    K
Sbjct: 170 WLEEIEE--AIDQCVPPPSSEDWELTTKEAVK 199


>SB_6737| Best HMM Match : Rib_5-P_isom_A (HMM E-Value=9)
          Length = 249

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 384 FGSGTPSSIARTSVIYSNQILFICTTSSYFTLCRGIL*NRS 262
           FGS    +I   + +YSNQ+ F  TT +   + +GI+ N S
Sbjct: 129 FGSKAHRAIVEAAFVYSNQLAFALTTDA--DVAKGIIPNFS 167


>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
          Length = 243

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +3

Query: 39  LHFVVKWRKRQIHSINRLQIQSLISSKQMFLKTRSKKLIR----N*KPNSFLRKSAASNK 206
           L  VVK +K  I+ +   ++Q LI   +  +KT+  K+      + +   +  K   +N 
Sbjct: 152 LEDVVKRKKEAIYGMELDKLQELIDQLEEAVKTKEDKVYGYEQVSQRDEDYTSKDINNNN 211

Query: 207 NVNQSRKK 230
           N+N +R++
Sbjct: 212 NINNNRRE 219


>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
          Length = 483

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 383 NSKN---WETLTLSLYKADYHGCMLTVVRSKCP 472
           N+KN   W+ LT    K    GC ++++ S+CP
Sbjct: 116 NAKNPLLWQKLTFEETKHLTLGCFMSIIESRCP 148


>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
          Length = 288

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 416 LYKADYHGCMLTVVRSKCPSFINKTGICIMDT 511
           +YK  Y     +V  SKCP   + T +C  DT
Sbjct: 239 VYKKQYDEAYKSVYGSKCPKHSDYTTLCHSDT 270


>SB_27000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 359 MDDGVPEPNSKNWETLTLSLYKADYHGCMLTVVRSKCP 472
           +D G  +P SK  ET+   L      G  + +V+SK P
Sbjct: 136 VDTGTDDPTSKWGETIFQELIALGKSGVKIRIVQSKAP 173


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 242 TRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVL 355
           T  EK  LR+Y    + +  E V  M   WL+++  ++
Sbjct: 127 TAAEKDILRYYYYIHNGIDTEHVAPMEDSWLDHVLSLV 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,563
Number of Sequences: 59808
Number of extensions: 298315
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)