Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31882
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic...    29   2.5  
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic...    29   2.5  
At3g23840.1 68416.m02997 transferase family protein low similari...    28   3.2  
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a...    27   5.7  
At3g31406.1 68416.m04009 hypothetical protein                          27   7.5  
At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C...    27   7.5  
At2g33560.1 68415.m04113 spindle checkpoint protein-related simi...    27   9.9  
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing...    27   9.9  

>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
           to dynamin like protein 2b (ADL2b) [Arabidopsis
           thaliana] GI:19032339
          Length = 780

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +3

Query: 30  KRVLHFVVKWRKRQIHS--INRLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASN 203
           K ++HF+V + KR++H+  I +L  ++LI   +  LK   +  I+  +    LR    +N
Sbjct: 678 KAIMHFLVNYTKRELHNVFIEKLYRENLI---EELLKEPDELAIKRKRTQETLRILQQAN 734

Query: 204 KNVNQ 218
           + +++
Sbjct: 735 RTLDE 739


>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
           to dynamin like protein 2b (ADL2b) [Arabidopsis
           thaliana] GI:19032339
          Length = 780

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +3

Query: 30  KRVLHFVVKWRKRQIHS--INRLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASN 203
           K ++HF+V + KR++H+  I +L  ++LI   +  LK   +  I+  +    LR    +N
Sbjct: 678 KAIMHFLVNYTKRELHNVFIEKLYRENLI---EELLKEPDELAIKRKRTQETLRILQQAN 734

Query: 204 KNVNQ 218
           + +++
Sbjct: 735 RTLDE 739


>At3g23840.1 68416.m02997 transferase family protein low similarity
           to hypersensitivity-related gene [Nicotiana tabacum]
           GI:1171577, acetyl-CoA:benzylalcohol acetyltranferase
           [Clarkia concinna] GI:6166330; contains Pfam profile
           PF02458: Transferase family
          Length = 420

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 427 GLSWMHVNGSPFQMSKLY 480
           GLSW H+ G PF +S  +
Sbjct: 157 GLSWAHIMGDPFSLSHFF 174


>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
           anther-specific protein ATA27 contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to
           anther-specific protein ATA27 (GI:2746341)  [Arabidopsis
           thaliana]
          Length = 535

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 326 IWLEYITEVLAMDDGVPEPNSKNWETLTLSLYKADY 433
           + + Y T V A+ D  P+P+  +W++ +L  ++  Y
Sbjct: 346 VGINYYTSVFALHDEEPDPSQPSWQSDSLVDWEPRY 381


>At3g31406.1 68416.m04009 hypothetical protein
          Length = 169

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 39  LHFVVKWRKRQIHSINRLQIQSLISSKQM-FLKTRSKKLIRN 161
           LH    W K  +  +NRL+ Q     K++  L+T +KK +R+
Sbjct: 61  LHIRKLWDKAMVEEVNRLREQGYNHHKKIQSLETLTKKCVRS 102


>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GI:4336436 from [Lotus japonicus]
          Length = 371

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 277 IVKSKCFFLFTSQTSGFFLDWFTFL 203
           +V+S  FFLF SQT   F+ ++ FL
Sbjct: 25  LVRSFFFFLFNSQTISSFIIFYLFL 49


>At2g33560.1 68415.m04113 spindle checkpoint protein-related similar
           to spindle checkpoint protein BubR1 (GI:22128593)
           [Xenopus laevis]; similar to Mitotic checkpoint
           serine/threonine-protein kinase BUB1 beta (EC 2.7.1.-)
           (MAD3/BUB1-related protein kinase) (Mitotic checkpoint
           kinase MAD3L) (Swiss-Prot:Q9Z1S0) [Mus musculus]
          Length = 395

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 287 HSVKYEDVVQMNKIWLEY 340
           HS +Y+D ++  K+WLEY
Sbjct: 118 HSERYKDDLRYLKVWLEY 135


>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to NUC-2 [Neurospora crassa]
           GI:1399532, xenotropic and polytropic murine leukemia
           virus receptor [Mus musculus castaneus] GI:6093320;
           contains Pfam profile PF03105: SPX domain
          Length = 287

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 335 EYITEVLAMDDGVPEPNSKNWETLTLSLYKADYHGCMLTVVRSKCPSFINKTGI 496
           EYI  +  + D V +  + N E + +     D+HG M+ ++     S +N TG+
Sbjct: 91  EYIIRLKELKDQVAKAKNSNEEMINIKKEIVDFHGEMVLLMNY---SALNYTGL 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,151,400
Number of Sequences: 28952
Number of extensions: 225275
Number of successful extensions: 530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)