Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31878
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 30 0.98
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 27 6.9
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_49220| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05) 27 9.2
SB_34286| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05) 27 9.2
>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 30.7 bits (66), Expect = 0.74
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = -3
Query: 412 ALYVTSAELKLK*PYLLDRTVTTWDTLV*---GAILSISAVSCPPTTVNTSGWKPLSTSF 242
+LYV L+ + P + D T ++ +V G +LSISAV+ P T + +SG + L
Sbjct: 101 SLYVLQDLLQGEPPIVQDVTFSSEYLVVLLQSGLVLSISAVT-PDTAILSSG-RELVVKH 158
Query: 241 TSTAGALPTLNNVYFTSISIFSTKYL 164
+A A+PT NN T ++ S ++
Sbjct: 159 QDSAIAMPTGNNTIKTVATVESGGFI 184
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 383 VEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYSKHVRMEAVVHE 246
VE+ VL G + Y G + + +P D +++ Y HV EA+V E
Sbjct: 54 VELPVLCGGEKVYTGNVKYQVSPFDHSNKIAKY---HVADEALVKE 96
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = -2
Query: 491 IIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPI 312
I +GY G+ + + ++ G++ G +CD RR + + G ++G +L C+
Sbjct: 396 ICLDGYTGADCSLSKALVPELFGIYDGGLCDIRRRPCKKTDIFG--DGFIGSENLTCHST 453
Query: 311 DFR 303
+F+
Sbjct: 454 EFK 456
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1437 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1467
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1459 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1489
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1481 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1511
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1503 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1533
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1525 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1555
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY LL I
Sbjct: 1591 RYPYALLTVPLRSTYDTLTLYLRYPYPLLTI 1621
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1547 RYPYALLTIPLRSTYDTLTLNLRYPYALLTI 1577
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 258 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 166
R P L P+RS + T+ + L YPY+LL +
Sbjct: 1569 RYPYALLTIPLRSTYGTLQLYLRYPYALLTV 1599
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 364 ISTAISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PS 483
+S+ + + ++HT PA+ P S++ + +Q R P+ P+
Sbjct: 267 LSSRETPPVQPRNHTCPAEKPHLSSLETPPVQPRNPTSPA 306
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 388 ARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESS 504
A+ ++ T PA+ P S+ + +Q+R P+ P+K SS
Sbjct: 106 AQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSS 144
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 313 SISAVSCPPTTVNTSGWKPLSTSFTSTAGALPTLNNV 203
SI A + TVN S W S TS+A L TL +V
Sbjct: 872 SILATANKLHTVNRSVWNSTSQVMTSSAAVLSTLKDV 908
>SB_49220| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
Length = 207
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 511 CEENFLS*SLKATMAPSPGALLIEYWTSVASSLALYVTS 395
C E F S S + ++ + A+ + +SVA+ L +YVTS
Sbjct: 14 CNEFFFSISHEVKVSLTAPAVFTSFLSSVANVLIIYVTS 52
>SB_34286| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
Length = 207
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 511 CEENFLS*SLKATMAPSPGALLIEYWTSVASSLALYVTS 395
C E F S S + ++ + A+ + +SVA+ L +YVTS
Sbjct: 14 CNEFFFSISHEVKVSLTAPAVFTSFLSSVANVLIIYVTS 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,152,947
Number of Sequences: 59808
Number of extensions: 305910
Number of successful extensions: 746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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