Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31878
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    99   2e-21
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 52/146 (35%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
 Frame = +3

Query: 75  LYFVLFIAAA-VSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 251
           L+ +LF+  + V    +   A +L  KQ L+ Y VENMD +++Y L+NVG  PA +V + 
Sbjct: 5   LFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQKVTID 64

Query: 252 D-NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDAT 428
           D + F  + F +V G L    ++I   +NV+H V +R   +G+FN+++A+VTY    +  
Sbjct: 65  DRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTDNENH 124

Query: 429 DVQYSISSAPGEGAIVAFKDYDRKFS 506
            V  ++++ PGEG I   ++YDR+F+
Sbjct: 125 HV--TLTNTPGEGYIYRQREYDRRFA 148


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +3

Query: 75  LYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 254
           +  V  I +A++A D    A++L+ K  + KY V   +   +Y + N+G +PA++V+L D
Sbjct: 1   MQLVFLILSALAAADAS--AKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSD 58

Query: 255 -NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTV 356
              F  D F ++ G  TA    I   + + H + V
Sbjct: 59  LKSFPTDRFEILKGSATASFPVIPANSTIYHHIVV 93


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 222 SAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSH 344
           S  A+ V L  NG++  VF V GGQ    + R++    +SH
Sbjct: 633 SGLAILVVLAQNGYNFGVFKVFGGQTLVVLSRLSFGVYLSH 673


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 325 GAILSISAVSCPPTTVNTSGWKPLSTSFTST 233
           G I + + +S P TTV  +   P+ST+ T+T
Sbjct: 26  GTITTTTTISAPTTTVPITTTNPVSTTTTTT 56


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
           protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 475 TMAPSPGALLIEYWTSVASSLAL 407
           T+AP  G LL+  W  V S LAL
Sbjct: 478 TVAPPKGRLLVSVWKVVRSDLAL 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,769
Number of Sequences: 27780
Number of extensions: 216386
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)