Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31878
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   10.0 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   10.0 

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 247 SFTSTAGALPTLNNVYFTSISI 182
           S TSTAG  PT      TS+SI
Sbjct: 721 SRTSTAGQFPTNVATTVTSMSI 742


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 PSPGALLIEYWTSVASSLALYVTSAE 389
           P P  +LIE +T+++ ++  Y   A+
Sbjct: 278 PQPKHMLIEAYTNLSMTMKYYDYGAD 303


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 PSPGALLIEYWTSVASSLALYVTSAE 389
           P P  +LIE +T+++ ++  Y   A+
Sbjct: 278 PQPKHMLIEAYTNLSMTMKYYDYGAD 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,388
Number of Sequences: 438
Number of extensions: 2764
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)