Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31878
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14030.1 68418.m01640 translocon-associated protein beta (TRA... 49 2e-06
At3g11550.1 68416.m01409 integral membrane family protein simila... 31 0.61
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 1.9
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 28 4.3
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 27 5.7
At1g74240.1 68414.m08598 mitochondrial substrate carrier family ... 27 5.7
At5g02010.1 68418.m00120 expressed protein contains Pfam profile... 27 7.5
At4g21410.1 68417.m03093 protein kinase family protein contains ... 27 7.5
At4g08250.1 68417.m01361 scarecrow transcription factor family p... 27 7.5
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 7.5
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 27 7.5
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al... 27 9.9
>At5g14030.1 68418.m01640 translocon-associated protein beta (TRAPB)
family protein low similarity to SP|P23438
Translocon-associated protein, beta subunit precursor
(TRAP-beta) (Signal sequence receptor beta subunit)
{Canis familiaris}; contains Pfam profile PF05753:
Translocon-associated protein beta (TRAPB)
Length = 195
Score = 48.8 bits (111), Expect = 2e-06
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Frame = +3
Query: 66 AKLLYFVLFIAAAVSAD--DEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVE 239
AKLL + + VSA V ++ K LN+ + V Y ++N GS+ A +
Sbjct: 6 AKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYD 65
Query: 240 VKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYK-AS 416
V L DN + F VV G + +R+ +SH + + + G F + A VT++ +
Sbjct: 66 VTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIPT 125
Query: 417 EDATDVQYSISSAP 458
+ A YS P
Sbjct: 126 KPALQEAYSTPLLP 139
>At3g11550.1 68416.m01409 integral membrane family protein similar
to unknown protein GB:AAD26967 [Arabidopsis thaliana];
contains TIGRFAM TIGR01569 : plant integral membrane
protein TIGR01569; contains Pfam PF04535 : Domain of
unknown function (DUF588)
Length = 204
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 72 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 251
L +F F+ S DD P +++ ++ YLV ++ I V L + +AP + + ++
Sbjct: 72 LPFFTQFLQFEASYDDLPTFQFFVIAMALVGGYLVLSLPISVVTILRPLATAPRLLLLVL 131
Query: 252 DNG 260
D G
Sbjct: 132 DTG 134
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 336 VSHVVTVRSNKYGYFNFSSAEVTYKASEDATDV 434
+S +T RS YG+ F A+ +A ED+T +
Sbjct: 49 ISDKLTRRSKGYGFVTFKDAKAATRACEDSTPI 81
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 81 FVLFIAAAVSADDEPVLARLLVSKQVLN 164
++LF+ A+S PVLAR+L +++N
Sbjct: 165 YILFLGVALSVTAFPVLARILAELKLIN 192
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 378 NSRTYWTGQSLHGIH*FEVQSYRFPR 301
NS+ +W G + H + E +SYR+ R
Sbjct: 242 NSKNWWEGSAYHQLSPVEARSYRWVR 267
>At1g74240.1 68414.m08598 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 364
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 449 ADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYS 279
A + D G F C+ + ++I G S + YIS P+ RG + YY+
Sbjct: 136 AGAVGDTLGSFIYVPCEVIKQRMQIQ---GTSSSWSSYISRNSVPVQPRGDMYGYYT 189
>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 546
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 475 TMAPSPGALLIEYWTSVASSLALYVTSAELKLK 377
T+ PSP I + +SV L YVT E +LK
Sbjct: 479 TVPPSPSRFKIPHSSSVKRVLTAYVTKNEPRLK 511
>At4g21410.1 68417.m03093 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 679
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 261 FHPDVFTVVGGQLTAEIDRIAPQTN--VSHVVTVRSNKYGYFNFSSAE 398
F PD V G TA A N VS + +++S YG++N SS +
Sbjct: 30 FDPDFNCVDRGNFTAN-STFAGNLNRLVSSLSSLKSQAYGFYNLSSGD 76
>At4g08250.1 68417.m01361 scarecrow transcription factor family
protein SCARECROW - Arabidopsis thaliana, PID:g1497987
Length = 483
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 352 VTTWDTLV*GAILSISAVSCPPTTVNTSGWKPLSTSFTSTAGA 224
V W T + + + + P + T+G+KPL SFT+ A
Sbjct: 398 VANWLTRITANDAEVESFASWPQWLETNGFKPLEVSFTNRCQA 440
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 294 QLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 425
++ ++ RI V H+VT S YG+ + + + +A EDA
Sbjct: 82 EVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 114 DDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK-LVDNGFHPDV 275
D A+LL+ L + EN++ L+K N+ + VE+K L+ F P+V
Sbjct: 127 DASESFAQLLLEN--LKNDMKENLETLIKDAESNIADSKTVELKGLLQQDFEPEV 179
>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
[Arabidopsis thaliana]; contains Pfam profile PF01055:
Glycosyl hydrolases family 31; identical to cDNA
alpha-xylosidase precursor (XYL1) partial cds GI:4163996
Length = 915
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 407 VCDFRRAEVEIAVLIGPDSHYMGYISLRCNPIDF-RGQLSAYYSK 276
V ++++A++ + V+ D H G+ NP+ + R +L A+ K
Sbjct: 312 VDNYKKAKIPLDVIWNDDDHMDGHKDFTLNPVAYPRAKLLAFLDK 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,036
Number of Sequences: 28952
Number of extensions: 192031
Number of successful extensions: 552
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -