Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31874
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.080
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 31 0.74
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 30 0.98
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 4.0
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 28 5.3
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045) 28 5.3
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 27 9.2
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075) 27 9.2
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 27 9.2
SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 33.9 bits (74), Expect = 0.080
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 173 QEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIAD-----ANGYQPSGAHLPTTPA 337
+ +G++ + S +V GS G +P GTP+ +A A ++ S A LP T A
Sbjct: 492 EREGSIHSSSGHSVSGSVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTA 551
Query: 338 --PLPIPDYI 361
P P P Y+
Sbjct: 552 VSPAPEPTYL 561
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 30.7 bits (66), Expect = 0.74
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 511 YCETRHINDRQCYGLRCFNNS 449
+C+ +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Frame = +2
Query: 227 QGSSGYTAPDGTPIQITYIAD--ANGY-----QPSGAHL--PTTPAPLPIPDYIARAIEY 379
Q S G+T PIQ +Y A + GY P+ AH P T P+ P Y A Y
Sbjct: 14 QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73
Query: 380 IRTHP 394
++ P
Sbjct: 74 AQSAP 78
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 205 TALVYERSLFLATDSVAGLILVLVFVRENVSILRHNL 95
T L+ R+L + ++ L L+ +R N+ ILRHNL
Sbjct: 583 TLLILRRNLLILRHNLLILRHNLIILRRNLLILRHNL 619
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +2
Query: 170 GQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGA----HL-PTTP 334
GQ + + +N+ R+ + Q G DG ++T + G QP H+ PTTP
Sbjct: 351 GQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLT-VQQPVGVQPVSLMDQRHIVPTTP 409
Query: 335 APLPIPDYIARAIEYIRTHPPKPEVGQRI 421
P P AR++ + +P E+ I
Sbjct: 410 IEHPAPPLNARSLLHFECYPRNQELTDEI 438
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 155 WSDIGTGICPGKRQHLATQFGHQ 87
W+ GT CPG++ L Q GH+
Sbjct: 857 WNAFGTHTCPGEQLCLVGQLGHR 879
>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
Length = 514
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 191 VNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARA 370
++ G A+ +G+ T P G P Q Y P G H TTP P +Y +
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475
Query: 371 IEYIRTHP 394
+ + HP
Sbjct: 476 VPTQQLHP 483
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 305 PSGAHLPTTPAPLPIPDYIARAIEYIRTHP 394
P G H TTP P DY + + HP
Sbjct: 483 PGGTHATTTPRRYPRNDYTQEGVPTQQLHP 512
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +2
Query: 155 SNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTP 334
S+ + Q A + IA + P+GTP+ + + D +PS + +
Sbjct: 122 SSATASSSQAAQPTRQTQPIDIASRVQPSAPTPEGTPVLVQSLPDVE--EPSASARSSAE 179
Query: 335 APLPIPD 355
P P+P+
Sbjct: 180 QPPPLPE 186
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 242 YTAPDGTPIQITYIA--DANGYQPSGAHLPTTPAPLPIPD 355
Y +P T Y A D GY PS +P++P P P D
Sbjct: 561 YISPTATAGDRRYPARPDPMGYSPSEMGVPSSPLPRPASD 600
>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 287 QQCK*FEWEYHQGQCSRLNLGRRWMHPHG 201
Q + EW +G LN G +W HP G
Sbjct: 473 QTVRSMEWRRTKGATPTLNTGPQWGHPKG 501
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 80 GEADAQIVSQD----ADVFPDKYQYQYQTSNGISGQE 178
G+ +AQ + DV P+ Y Y+T G+ GQE
Sbjct: 1144 GQGEAQYADDEWDYVEDVVPEAETYGYETYQGVEGQE 1180
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 155 WSDIGTGICPGKRQHLATQFGHQ 87
W GT CPG++ L Q GH+
Sbjct: 398 WHAFGTHTCPGEQLCLVGQLGHR 420
>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 215 SIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 340
S+ +QG + Y G+ + I A G P GA TTP P
Sbjct: 53 SLVIQGVAKYKPGGGSMVLSLIIQGAPGLMPGGA--ATTPGP 92
>SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)
Length = 911
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 155 WSDIGTGICPGKRQHLATQFGHQ 87
W GT CPG++ L Q GH+
Sbjct: 666 WHAFGTHTCPGEQLCLVGQLGHR 688
>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
Length = 1640
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 155 WSDIGTGICPGKRQHLATQFGHQ 87
W GT CPG++ L Q GH+
Sbjct: 1394 WHAFGTHTCPGEQLCLVGQLGHR 1416
>SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 155 WSDIGTGICPGKRQHLATQFGHQ 87
W GT CPG++ L Q GH+
Sbjct: 546 WHAFGTHTCPGEQLCLVGQLGHR 568
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,993
Number of Sequences: 59808
Number of extensions: 325206
Number of successful extensions: 837
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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