Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31873
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    27   0.13 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   3.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   3.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   4.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 69  RCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSP 164
           R  R VVPP   C  P+T+ P P     D++ P
Sbjct: 195 RSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIP 227


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASS 172


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 83  PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 128


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 173
           PP ++PS   +  +  +  P+S  T     P    ++++  SP  S
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 130 HRAHLRRIRTPPRHPASGLSRSRP 201
           H+A +R +  PP+       RS P
Sbjct: 62  HKAPIRPVALPPKREIPSPKRSSP 85


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 84  VVPP-VSCWTPATVSPTPCPS-TKDTHSPTPS 173
           V+PP  +    AT   +P    TKD  SPTPS
Sbjct: 22  VIPPHYNIHHGATPPQSPNQQYTKDCSSPTPS 53


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -3

Query: 136 HGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 38
           HG    V G+         ++  +H LD D  G
Sbjct: 600 HGYAFNVVGIGRSPDQNVKKINLKHALDLDRRG 632


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 311 DFEQEMATAASSSSLEKSYELPDGQ 385
           DF     ++ +S  L+ SY+ P  Q
Sbjct: 62  DFHSSSPSSDTSQDLQHSYQSPQTQ 86


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -3

Query: 136 HGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 38
           HG    V G+         ++  +H LD D  G
Sbjct: 600 HGYAFNVIGIGRSPDQNVKKINLKHALDLDRQG 632


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 312 TSSRKWPPLHPAAPSRSLTNFPTVRSS 392
           +S+  +PP HP + S+ L +    R+S
Sbjct: 68  SSTSPYPPNHPLSGSKHLCSICGDRAS 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,723
Number of Sequences: 336
Number of extensions: 3130
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)