Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31872
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 179 1e-45
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 172 1e-43
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 158 3e-39
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 30 1.3
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 2.9
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 3.9
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 5.1
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 5.1
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 28 5.1
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 6.8
08_02_0536 - 18302394-18302826,18302903-18303183,18303480-183037... 27 6.8
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 27 8.9
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 179 bits (435), Expect = 1e-45
Identities = 80/158 (50%), Positives = 109/158 (68%)
Frame = +3
Query: 42 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 221
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 222 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 401
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVI
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVI 173
Query: 402 ACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIV 515
ACIGE LEERE+GKT +V F+Q+KA +I W ++V
Sbjct: 174 ACIGELLEEREAGKTFDVCFKQMKAFADSI-TNWADVV 210
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 172 bits (419), Expect = 1e-43
Identities = 85/161 (52%), Positives = 108/161 (67%), Gaps = 2/161 (1%)
Frame = +3
Query: 39 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 212
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 213 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 392
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 393 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIV 515
KVIACIGETLE+RE+G T EVV Q KA+ I D W N+V
Sbjct: 124 KVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVV 163
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 158 bits (383), Expect = 3e-39
Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Frame = +3
Query: 66 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 239
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 240 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 419
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 420 LEERESGKTEEVVFRQLKALVSAIGDKWENIV 515
LE+RESG T +VV Q KA+ I D W N+V
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVV 154
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 3 KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNV 140
+V S I+E+ RKF + G NW ++ ++ + + LKKG PN+
Sbjct: 104 RVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNL 152
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 221 LGCNFDIIRNDSLHIRQVNSRNTNNYL 141
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +3
Query: 24 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 122
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 459 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 307
++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q
Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 304 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 179
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 24 ITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEV 146
I+E+ RKF + G NW ++ + + + LKKG PN+ +
Sbjct: 156 ISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSM 199
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 300 VILGHSERRTIFGEKDELVAEKVAHALESGLKVIAC--IGETLEERESGKTEEVVFRQLK 473
V++G F E++E E + + G A IGE E E G EE V +LK
Sbjct: 30 VLMGKRRNEGFFIEEEEEEEEVLTESSSIGAPSPASSSIGENSGEEEGGDDEEEVESKLK 89
Query: 474 ALVSAIG 494
A +G
Sbjct: 90 AEDEQVG 96
>08_02_0536 -
18302394-18302826,18302903-18303183,18303480-18303747,
18303959-18303996,18304459-18304761
Length = 440
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 318 ERRTIFGEKDELVAEKVAHALESGLKVIACI 410
E+ I GE++ + EK+ A+ G K IA +
Sbjct: 307 EKSVIIGERNRVATEKIQEAINHGYKRIAVL 337
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 420 LEERESGKTEEVVFRQLKALVSAIG 494
+EE E G EEV+ + K LV +G
Sbjct: 194 MEEEEGGDQEEVLLEEKKMLVDVVG 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,999
Number of Sequences: 37544
Number of extensions: 248722
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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