Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31869
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.            29   9.7  
D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding prote...    29   9.7  
AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.              29   9.7  
AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2 v...    29   9.7  

>L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.
          Length = 3224

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 386  LTLLANTPLVTLCIYYENT-IPNMSSEIFIQVLIYSGEKNVLPRD*NSEGRLTVGSKD-- 216
            + L+ N P V+ CI  +NT   N S   F+    +   +  LP+  NS+ R    +K+  
Sbjct: 1423 ICLVRNEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQ 1482

Query: 215  -DCISNDVFNQ 186
             DC +  V N+
Sbjct: 1483 WDCSACLVQNE 1493


>D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding protein 2)
            protein.
          Length = 3224

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 386  LTLLANTPLVTLCIYYENT-IPNMSSEIFIQVLIYSGEKNVLPRD*NSEGRLTVGSKD-- 216
            + L+ N P V+ CI  +NT   N S   F+    +   +  LP+  NS+ R    +K+  
Sbjct: 1423 ICLVRNEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQ 1482

Query: 215  -DCISNDVFNQ 186
             DC +  V N+
Sbjct: 1483 WDCSACLVQNE 1493


>AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.
          Length = 3224

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 386  LTLLANTPLVTLCIYYENT-IPNMSSEIFIQVLIYSGEKNVLPRD*NSEGRLTVGSKD-- 216
            + L+ N P V+ CI  +NT   N S   F+    +   +  LP+  NS+ R    +K+  
Sbjct: 1423 ICLVRNEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQ 1482

Query: 215  -DCISNDVFNQ 186
             DC +  V N+
Sbjct: 1483 WDCSACLVQNE 1493


>AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2
            variant protein.
          Length = 3138

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 386  LTLLANTPLVTLCIYYENT-IPNMSSEIFIQVLIYSGEKNVLPRD*NSEGRLTVGSKD-- 216
            + L+ N P V+ CI  +NT   N S   F+    +   +  LP+  NS+ R    +K+  
Sbjct: 1337 ICLVRNEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQ 1396

Query: 215  -DCISNDVFNQ 186
             DC +  V N+
Sbjct: 1397 WDCSACLVQNE 1407


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,358,146
Number of Sequences: 237096
Number of extensions: 989254
Number of successful extensions: 4775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4775
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)