Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31868
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCS7 Cluster: NADH dehydrogenase subunit 1; n=4; Dika...    38   0.14 
UniRef50_A0CKN5 Cluster: Chromosome undetermined scaffold_2, who...    36   0.72 
UniRef50_Q8IC12 Cluster: Putative uncharacterized protein PF07_0...    33   5.1  

>UniRef50_A7KCS7 Cluster: NADH dehydrogenase subunit 1; n=4;
           Dikarya|Rep: NADH dehydrogenase subunit 1 - Pleurotus
           ostreatus (Oyster mushroom) (White-rot fungus)
          Length = 346

 Score = 37.9 bits (84), Expect = 0.14
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 290 TSIIVFK*ITLRLSVSNYNFLNQYARDCVINYVSALSTLRKCFFCWY--WYR 439
           +SI++F  IT  L +  YN    +  + +IN  S +  L+ C FC++  W+R
Sbjct: 253 SSIVLFSCITAILFLGGYNLPEVFVNNSIINLQSIILGLKTCIFCFFFVWFR 304


>UniRef50_A0CKN5 Cluster: Chromosome undetermined scaffold_2, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_2,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 466

 Score = 35.5 bits (78), Expect = 0.72
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +2

Query: 296 IIVFK*ITLRLSVSNYNFLNQYARDCVINYVSALSTLRKCFFCWYWYRNFCASRGRQTES 475
           +I  + I +  +++ Y+FL Q  +  ++  +  ++   KC   W WY  F  + G     
Sbjct: 140 VINIRKIAINETITQYSFLVQGVKILLVLQLMLITMRWKCTIYWSWYTTFSIAWGLLV-- 197

Query: 476 LNFIKHFQFVL 508
           + FI HF F+L
Sbjct: 198 IFFIVHFVFLL 208


>UniRef50_Q8IC12 Cluster: Putative uncharacterized protein
           PF07_0026; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF07_0026 - Plasmodium
           falciparum (isolate 3D7)
          Length = 961

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 247 NTDHGPD-IHSHP*NLSR--HS*YTCYIQIEHINATSHSVRNVNSH 119
           N D+  D I+SHP N S    S Y     I H+N+ SH + N  SH
Sbjct: 483 NNDYSSDLINSHPINYSNVPESNYNMNHPIHHMNSASHGMSNNTSH 528


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,631,579
Number of Sequences: 1657284
Number of extensions: 7795797
Number of successful extensions: 13786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13779
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)