Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31866
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   2.9  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   2.9  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   2.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.8  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   3.8  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   5.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   5.1  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   6.7  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.9  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   8.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.9  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   8.9  

>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 90  DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEG 200
           D  F     V + VQ P T  +AK F P + K S EG
Sbjct: 208 DPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREG 244


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +3

Query: 18  WLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRT--VTEAKNFEPWREKCS 191
           W++    F+E FL + D  +Q     +++   QV   V    T  V E +   P+  + +
Sbjct: 545 WVEKIVSFIEQFLNFQDMEIQRRASEFYILFNQVSDIVNTSDTMEVLELQKKPPYIVQNT 604

Query: 192 VE----GNPACWVPHSCKLTSKEVPGETINLQTCLRCPVN 299
           +     G P    P + K   K +P E ++    L CP+N
Sbjct: 605 MYKLFFGEPL--NPVAVKAQRKVMPDENLD----LNCPIN 638


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 236 HFKGSSRRNHQFTNLFEMPSQLPL 307
           HF+ S++ N   T+LFE  S+L L
Sbjct: 154 HFEASAKENTNVTDLFETVSRLAL 177


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 278  LFEMPSQLPLVKRPH-----GRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVGNV 430
            L+ +P  +P+    H     G WPL  S + E   +  +  I  S CSKY+  GNV
Sbjct: 1290 LYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEE--VCSVFNISKSVCSKYVQFGNV 1343


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +2

Query: 74  PSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPCMLGTSFLQAHFKGSS 253
           P  P + +   HD  + + T   + D   +L    R+ LRR     L  S L      ++
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319

Query: 254 RRNHQFTNLFEMPS 295
             NH  T+L   P+
Sbjct: 320 NANHN-TDLSHDPT 332


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 27  NNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNP 206
           N+P    +F ++ + +LQ+   +  +   +++  V++  T + AK F P  +      N 
Sbjct: 13  NSPTTTTSFSWFTNNMLQTRLGLGALRQGRLLFAVKSFSTTSVAKIFPPPPQTIKGTVND 72

Query: 207 ACWVPHSCKL 236
           A   PH  KL
Sbjct: 73  AAVFPHHSKL 82


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 219 PHSCKLTSKEVPGETINLQTCLRCP 293
           P+S  +TS   PGE +N    L+ P
Sbjct: 329 PYSFPITSSVHPGEDVNFTVALKVP 353


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 157 PRTSSRGEKSAPSKET-LHAGYLIPASSLQRKFPEKPSIYK 276
           P  S  G+     K+T L     + AS  QRK  EKPS+ K
Sbjct: 193 PLLSVDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSK 233


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 186 CSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCPVN 299
           C   G P  W PHSC +  K +    + + T L C  N
Sbjct: 3   CPTHG-PTTWNPHSCTVVEKCI--TNLLITTILLCFFN 37


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 269 IDGFSGNFL*SELAGMRYPAC 207
           I GF  NF   +++GM YP C
Sbjct: 569 IRGFLHNFSLMKISGMAYPQC 589


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 152 SHGTWVLYPLDHLCHGNEVNVVVALKDLVYP 60
           SHG++ +Y L+   H  ++NVV+  K ++ P
Sbjct: 305 SHGSFSIYKLNANAHSFKLNVVIE-KGIIPP 334


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 21  LKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFE 170
           L + P +++  L W+DEI +     Y V       W    + ++  KN+E
Sbjct: 86  LNHTPSYIDNELEWLDEIAEDFQKNYQV-------WHHRQKILSLTKNYE 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,075
Number of Sequences: 5004
Number of extensions: 50593
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)