Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31866
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0466 + 3649500-3649635,3649925-3650520                           28   5.1  
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     27   6.8  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    27   6.8  
07_03_1302 + 25618621-25620495                                         27   8.9  

>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 227 LQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWP 334
           LQ H +   +R    T LFE+  QL L   P G  P
Sbjct: 151 LQLHLRAEPKRGRPGTGLFELGLQLHLWAEPKGDRP 186


>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 18  WLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVI 122
           WL+ + + LEAFLY I  +     D   V +  V+
Sbjct: 684 WLRVDSKLLEAFLYLITTVFDVSQDQDLVQLVDVV 718


>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 245  GSSRRNHQFTNLFEMPSQLPLVKRPHGRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVG 424
            G  +  HQ  +   MP+   ++    G   + R+ +L  HVL  LIL+   +   Y+++ 
Sbjct: 1209 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 1268

Query: 425  NV 430
            N+
Sbjct: 1269 NI 1270


>07_03_1302 + 25618621-25620495
          Length = 624

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 212 LGTSFLQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWPLLRSHDLEPHVLY*LILIW 391
           +G  F++   KG       +T L +   ++   K+ HG   ++    LEP+V+   +LI 
Sbjct: 204 VGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLIN 263

Query: 392 C 394
           C
Sbjct: 264 C 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,567
Number of Sequences: 37544
Number of extensions: 327228
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)