Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31866
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                49   3e-06
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       48   6e-06
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   5.3  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   5.3  
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)                   28   5.3  
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 27   6.9  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +3

Query: 114 QVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCP 293
           QVI+W++NP+ V  A  F  W   C     P C  P+ C  T+     +   + TC  CP
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW--DCLTRPKPRCTTPNVCHYTTP----QDFYMPTCSDCP 518

Query: 294 VNYPWLNDPTGD 329
            ++P   +P G+
Sbjct: 519 KHFPSPTNPDGE 530


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 81  SHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACW 215
           S  DVYFVT++Q I+W++ P  + + K F PW  +C     PA W
Sbjct: 818 SQGDVYFVTVSQAIEWIKTPTPLEKIKTFAPW--QCDKPAPPAPW 860


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 108  MTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPG 257
            + QVI + ++P   ++     P+    +V G P C    +C  TSK V G
Sbjct: 3934 LVQVIIFGRDPCYASDCAEKRPYSTCQAVNGQPTCVCNKNCPSTSKPVCG 3983


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 208  AGFPSTEHFSLHGSKFLASVTVRGFCTHWITCVM 107
            AG P+T HF LHG+  +++    G  T  +T +M
Sbjct: 1132 AGPPNTSHFGLHGASTISTTLTPGQST-TLTIIM 1164


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 447  DKIALVTLPTIMYFEQLLHQININ**STWGSRSWLLNSGHRPWGRLTRGS 298
            ++ AL  +  I YF   LH       +   +  +L+N  H P GRL R S
Sbjct: 1005 EREALALVTGIRYFSCYLHNKRFEVYTDHAALKYLMNIKHDPTGRLARWS 1054


>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
          Length = 702

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +2

Query: 224 FLQAHFKGSSRRNHQFTNLFEMPSQLPLVK----RPHGRWPLLRSHDLEPH 364
           F +AHF+  +  +      F  P Q P  +     PH + P  R+   EPH
Sbjct: 329 FSEAHFQSPTSNSLFQRPTFRAPHQTPFFRAPLSEPHSQSPTFRAPQSEPH 379


>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +3

Query: 108 MTQVIQWV-QNPR---TVTEAKNFEPWREK 185
           + ++ QW+ QNPR    ++  +N+EPW E+
Sbjct: 151 LKEIDQWLNQNPREIVVISFTRNYEPWNER 180


>SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 175 HGSKFLASVTVRGFCTHWITCVMVT 101
           H ++ L  +TV   CT WI C  VT
Sbjct: 320 HPTRSLTLITVEHGCTTWINCDQVT 344


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +3

Query: 210  CWVPHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDPTGDGHY 338
            C+VP  C + ++ + G T  ++    C   + +LN       Y
Sbjct: 1310 CYVPFFCAMVTRVIVGYTTPVKIAYECGATFVYLNSTLNPALY 1352


>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +3

Query: 108 MTQVIQWVQNPRTVTEAKNFEPWREK----CSVEGNPACWVPHSC 230
           +  +I  VQ       AK    W +     CS  G+ AC VP+SC
Sbjct: 125 LQNLIDGVQQEFKCCGAKGINDWDKNIYFNCSSPGSEACGVPYSC 169


>SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 719

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 209 CRVSFDGALFSPRLEVLGFSHGTWVLYPLDH 117
           C  + D A  + +   L  +HG W   PLDH
Sbjct: 319 CSKAGDKATSNAKENALNAAHGAWYTIPLDH 349


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +1

Query: 85  TTTFTSLP*HK*SNGYKTHVP*LK-PRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEK 261
           +TT TS P    ++   T  P    PR  S    SAPS  T   G     S+     P  
Sbjct: 46  STTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTSTPRT 105

Query: 262 PSIYKLV*DAQSTTPG*TTPRAMAT 336
            S       + STT   TT RA +T
Sbjct: 106 GSTTTTSAPSTSTTSNSTT-RAPST 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,844
Number of Sequences: 59808
Number of extensions: 380358
Number of successful extensions: 1024
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)