Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31862
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45819| Best HMM Match : DUF567 (HMM E-Value=5.7)                    28   5.3  
SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)          27   9.2  

>SB_45819| Best HMM Match : DUF567 (HMM E-Value=5.7)
          Length = 310

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 266 KQVFSLHYCFLF--IYLLNGIFLDSRAFLI 183
           ++VF +  CFL   ++L+ G FLD   FL+
Sbjct: 269 REVFLVEGCFLDREVFLVEGFFLDKEVFLV 298



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 266 KQVFSLHYCFLF--IYLLNGIFLDSRAFLI 183
           ++VF +  CFL   ++L+ G FLD   FL+
Sbjct: 197 REVFLVEGCFLDREVFLVEGFFLDREVFLV 226


>SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)
          Length = 396

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = +2

Query: 146 KMFKTMFYVTRSILRMLSSPRICHLXXXXXXXXXXXXTLVFKMHNVIKVNFCY*ICSY 319
           K F       RS   +   P ICH               ++  HNV+ +N+   ICSY
Sbjct: 326 KRFLPFVSCDRSYETLFQRP-ICHFKEPFVVHGVSEVQQIYMHHNVVVMNYVPTICSY 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,817
Number of Sequences: 59808
Number of extensions: 224340
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)