Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31862
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08960.1 68416.m01047 importin beta-2 subunit family protein ...    28   4.3  

>At3g08960.1 68416.m01047 importin beta-2 subunit family protein low
           similarity to Lph2p [Saccharomyces cerevisiae]
           GI:1163089; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 754

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 77  WTDL*RPCISELY*MVFFNNY 139
           WT+  RPC   LY MV F NY
Sbjct: 360 WTEKLRPCAEALY-MVLFENY 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,230,312
Number of Sequences: 28952
Number of extensions: 153091
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)