Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31860
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    30   0.24 
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.41 
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    27   2.2  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    26   3.8  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   5.1  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   5.1  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.7  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   8.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.9  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   8.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   8.9  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 246 KEADTQCRQKIYPEIRYCKVLNVI----YSKVKLLQNTDRHT 359
           K+ DT+C  K  P++ YC + N      Y  V L+QN +R T
Sbjct: 108 KKNDTKCNWKYNPDLDYCYLDNSTSPDEYVYVSLVQNPERFT 149


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 112 YQKHKHNKRPIVWSRN*HDFPLIFINTNNFPQ 17
           ++K + +K P V++   H +P  FI   +FPQ
Sbjct: 89  FEKWEFSKEPTVYTHGTHTWPFTFIIPGHFPQ 120


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 315 IYSKVKLLQNTDRHTKSKLKYARVHLIGT 401
           IY    + QN D+H   +  YAR+ L+ T
Sbjct: 30  IYGNFVIQQNWDKHATLRQNYARLGLLAT 58


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 14  VLWKIISVD-EYQWEIVLITTPNDGSLIVF 100
           V  ++++V  +Y+WE + +   N G +I+F
Sbjct: 168 VFGRLVNVQGDYKWEYLFVDVANYGKIIIF 197


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 116 LSSCDDGQVIW*SEVFMSYAGL-SRLQ*DPF 205
           LSS D+G+ IW  + F ++ G+   +Q  PF
Sbjct: 46  LSSFDNGEKIWVEDAFTTFFGIPDVIQLSPF 76


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 130 ITARKIYQKHKHNKRPIVWSRN*HDFPLIFINTNNFPQHDTNT 2
           + + K+ QK K     +    +     +  INT+N P HD  T
Sbjct: 107 VASYKVPQKEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKT 149


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 192 SEILSLDKSCATRRRITEKEADTQCRQKIYPEIRYCKVLNVIYSKV 329
           S  L LDK C    +  ++  D +  Q I  +I +CK  +V+ S +
Sbjct: 26  STSLCLDKLCNIYTQGQDENEDAKELQAIKIKIEWCKDTSVLLSSI 71


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 409 KNVVPIKWTLAYFNFDLVCLSVFCNNFTFEYITLRTLQYLISGYIFC 269
           KNV  I+  LA  +FDL+C +       +E+   RTL  + S   +C
Sbjct: 413 KNV--IRQFLAKHDFDLICRAHMVVEDGYEFFNDRTLCTVFSAPNYC 457


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 207 EKGSHCNRESPAYDINTSLYQITWPSS 127
           E GS     + +Y++ TS  Q++WPS+
Sbjct: 741 EIGSSIAGTAGSYNVGTSNTQLSWPST 767


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 355  CLSVFCNNFTFEYITLRTLQYLISGYIFCRHCVSASFSV 239
            CL + C +F     T   L  + +  +FCR    A+ S+
Sbjct: 937  CLQLICTDFLASLDTSNYLDLMDTLLVFCRQLEDANVSL 975


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 219 CATRRRITEKEADTQCRQKIYPEIRYCKVLNVIYSKVKLLQNTDRHTKSKLKYARVHLIG 398
           C TR +I    A  +   +    + +  V N++YS ++L  +    T S   Y R  L G
Sbjct: 172 CQTRIQIDSSRALKKTYPRFIKTLFHLAVGNLMYSAIRLEFDPSSATYSLPPYQRPFLRG 231

Query: 399 TT 404
            T
Sbjct: 232 IT 233


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 379 AYFNFDLVCLSVFCNNFTFEYITLRTLQYLISGYIFCRHCVSASFSVIRRRVA 221
           +Y N+ +  LS          I L+ + YLI  Y+F      A+ +++R  +A
Sbjct: 471 SYVNWVVPALSGLATGCGILLIFLQCINYLIDAYLFRAASAIAANTIMRSAMA 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,623
Number of Sequences: 5004
Number of extensions: 47887
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)