Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31860
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   29   2.3  
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)                   29   3.0  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              27   6.9  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 277 IFCRHCVSASFSVIRRRVAHDLSRERISLQP*EPSIRHKH 158
           I CR C++   SV  R  A   SR R+++   +PS+   H
Sbjct: 186 IMCRQCIATGVSVCNRLSARHNSRLRLAMSQ-KPSVSFTH 224


>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
          Length = 390

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 277 IFCRHCVSASFSVIRRRVAHDLSRERISLQP*EPSIRHKHFTLPNHLAIITARKI 113
           I CR C++   SV  R  A   SR R+++   +PS+    FT+ +   +I   ++
Sbjct: 67  IMCRQCIATGVSVCNRLSARHNSRLRLAMSQ-KPSV---SFTIDDSFGVIDLSRL 117


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 153 LYQITWPSSQLERYIRSTNTISDPSFGVVINTIS 52
           LY+    SS +E +I S  TI  P F  ++N +S
Sbjct: 203 LYRALETSSLIEFFILSAETIVSPCFATLLNRLS 236


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 222 ATRRRITEKEADTQCRQKIYPEIRYCKVLNVIYS 323
           ++RR+I   E + QC   +   ++Y +  N++YS
Sbjct: 688 SSRRKIRSGEVEVQCTISVSQRMKYAENENLLYS 721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,646
Number of Sequences: 59808
Number of extensions: 338867
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)