Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31860
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    30   0.85 
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    29   2.0  
EF090262-1|ABK78775.1|  120|Caenorhabditis elegans glycoprotein ...    29   2.0  
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    27   6.0  

>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 403 VVPIKWTLAYFNFDLVCLSVFCNNFTFEYITLRTLQYL 290
           ++P++W L  FNF         N  T  YI L +  YL
Sbjct: 59  IIPVRWPLLLFNFFCTFQDFQFNTLTIPYIFLPSFGYL 96


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 364 DLVCLSVFCNNFTFEYITLRTLQYLISGYIFCRHCVSASFSV 239
           +L+  ++ CN  T      + LQYL+   I+   CV A F+V
Sbjct: 173 NLINFTIICNKETVS----KVLQYLLENEIYLTKCVKAKFNV 210


>EF090262-1|ABK78775.1|  120|Caenorhabditis elegans glycoprotein
           hormone alpha 2 protein.
          Length = 120

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 25/83 (30%), Positives = 35/83 (42%)
 Frame = +3

Query: 18  CGKLLVLMNINGKSC*LRLQTMGRLLCLCF*YIFRAVMMAK*FGRVKCLCRMLGSHGCSE 197
           C K+ V   IN K C L +  + R    CF + F   +  K     KC CRM+      E
Sbjct: 36  CKKVGVEELINEKGCDLMIIRINRCRGHCFSFTFPNPLTKKYSVHAKC-CRMVE----WE 90

Query: 198 ILSLDKSCATRRRITEKEADTQC 266
           +L  +  C+   R     + TQC
Sbjct: 91  MLETELKCSKGNRNLRIPSATQC 113


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 394 IKWTLAYFNFDLVCLSVFCNNFTFEYITLRTLQYLISGYIFCRHCVS 254
           + WTL  F F L+ L+    +F   Y+   ++  L+S +I C HC S
Sbjct: 254 LAWTL--FTFTLITLTEAIPSF---YLVGTSIGQLLSTWILCAHCYS 295


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 183 HGCSEILSLDKSCATRRRITEKEADTQCRQKIYPEIRYCKVLN 311
           H C  +   D+S  TR  +T    D+QCR K    I YC   N
Sbjct: 115 HMC--VYETDQS-VTRNMLTNMRKDSQCRIKHLSSILYCASQN 154


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
            protein W02D3.10a protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 376  TQEST*LELHSYSRFLLEYMEFKNHETRMHYLS 474
            + ++T +E+H     +LE++  +N E + H++S
Sbjct: 1118 SDKTTAIEMHEIMENILEFLSEENEEMKYHFIS 1150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,301
Number of Sequences: 27780
Number of extensions: 262832
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)