Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31860
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    31   0.61 
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00...    27   5.7  
At5g05580.1 68418.m00606 omega-3 fatty acid desaturase, chloropl...    27   7.5  
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote...    27   7.5  
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    27   7.5  
At2g41950.1 68415.m05190 expressed protein                             27   9.9  

>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 340 CNNFTFEYITLRTLQYLISGYIFCRHCVSASFSVIRRRVAHDL 212
           C   T+EY+ L  L  L   YI C HC +  + V  +  +H L
Sbjct: 499 CQMCTYEYVNLN-LNCLECDYILCFHCATLPYKVRYKHDSHFL 540


>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 472

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 58  RVNYDSKRWVAYCVCASDISFEL**WPSDLVE*SVYVVCWALTVAVRSFL-----WINRV 222
           R +  SKRW   C+  +++SF+     SD V   +    ++  VA RSF      W++  
Sbjct: 31  RTSVLSKRWRYLCLETTNLSFK----ESDYVNPDITDAEYSRIVAYRSFFCSVDKWVSIT 86

Query: 223 QHDV 234
           QH V
Sbjct: 87  QHQV 90


>At5g05580.1 68418.m00606 omega-3 fatty acid desaturase,
           chloroplast, temperature-sensitive (FAD8) identical to
           SP:48622 Temperature-sensitive omega-3 fatty acid
           desaturase, chloroplast precursor (EC 1.14.19.-)
           {Arabidopsis thaliana}; contains Pfam profile PF00487:
           Fatty acid desaturase; identical to cDNA plastid fatty
           acid desaturase GI:1030694
          Length = 435

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 181 LTVAVRSFLWINRVQHDVGS 240
           LT   R + WIN + HD+G+
Sbjct: 339 LTTLDRDYGWINNIHHDIGT 358


>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
           similar to lethal leaf-spot 1 from Zea mays
           [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
           domain
          Length = 537

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 183 ESPAYDINTSLYQITWPSSQLERYI 109
           ESP YD+N    ++T+  +Q +R++
Sbjct: 393 ESPDYDVNKQYTKLTFTPTQADRFV 417


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 195 EILSLDKSCATRRRITEKEADTQCRQKIYPEIRYCKVLNV 314
           ++   D SC  RR ITE   DT    +I  + +  K +++
Sbjct: 213 DVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDI 252


>At2g41950.1 68415.m05190 expressed protein
          Length = 266

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 256 SASFSVIRRRVAHDLSRERISLQP*EPSIRHKHFTLPNHLA 134
           S+S +++   VA D SR R+SLQP + +    H   P HL+
Sbjct: 8   SSSSALLPSLVAFDSSR-RLSLQPKKLNRLQSHLFSPQHLS 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,622
Number of Sequences: 28952
Number of extensions: 231159
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)