Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31858
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)             27   8.7  

>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/78 (24%), Positives = 29/78 (37%)
 Frame = +2

Query: 5   QGKTFTNPKANNVNTLNGTESVGSVFLGSDTSPHREWYVNLI*CSECVFLTTMKIEN*KL 184
           +G      K  +   + G+ +     +  +  P  EWY N     EC  LT +  EN   
Sbjct: 24  KGPPVFKQKLKDCKIIEGSAARFECQITGNPEPEVEWYRNGELLKECKQLTFLYDENDNC 83

Query: 185 KLRIVSKSGLDADNSTII 238
           KL I      DA    ++
Sbjct: 84  KLIITEGKHADAGEYKVV 101


>SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)
          Length = 598

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 201 ETILNFNFQFSIFMVVKKTHSLHQIRFTYHSLWGLVSDPRK 79
           ET+L+F   F + + +     L + +FTYHS W     P+K
Sbjct: 456 ETLLHF---FDV-VYMNWNPRLFEYKFTYHSTWAAQEGPKK 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,298
Number of Sequences: 59808
Number of extensions: 291387
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)