Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31857
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   5.1  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   5.1  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   6.7  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 206  MEALRRMQQIPQWH 247
            +EALRR Q +P+W+
Sbjct: 1204 LEALRRRQAVPEWY 1217


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 329 VTGIFRLSSSSASDCSVHGDGICGTAYNAIEVSVAY 222
           +T  F + S +  DCS      CG  ++ I   + Y
Sbjct: 37  ITDRFAVDSDNTPDCSFDDSSYCGGTWSGIRSKLDY 72


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 293 SDCSVHGDGICGTAYNA-IEVSVAYDVELP 207
           SD  +HGDGI G A ++ IE     +++ P
Sbjct: 235 SDYVLHGDGISGAASDSEIEEDATVEIDRP 264


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 6   HEYSYSLQS*RNHRLVHVTXSSSTSILEKHRKVSR*KSV*FF*FSEL--FCVLPPFVTRF 179
           H  S ++ S RN   +    +  T+I+++ ++  +  ++ F+ F  +    VL   +   
Sbjct: 432 HVGSVAVTSSRNGLYIATIDTWCTNIIDEQQRNVKQTALKFWQFDSVQKTWVLMTRIDNP 491

Query: 180 HSGLEILTIWKLYVVCNRYL 239
           H  LE++T  K+    NR++
Sbjct: 492 HGNLEVVTALKMMTSSNRFI 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,088
Number of Sequences: 5004
Number of extensions: 37163
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)