Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31857
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05100.1 68416.m00554 expressed protein                             27   7.5  
At1g21710.1 68414.m02718 8-oxoguanine-DNA glycosylase (OGG1) sim...    27   7.5  
At5g10340.1 68418.m01199 F-box protein-related / SLF-related con...    27   9.9  
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta...    27   9.9  

>At3g05100.1 68416.m00554 expressed protein
          Length = 336

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 338 INFVTGIFRLSSSSASDCSVHGDGICGTAYNAIEVSV 228
           ++FV  +F L SSS S CS   + +  +  +A+E SV
Sbjct: 27  VSFVAAVFFLLSSSFSSCSC-PEALSSSPTDAVEASV 62


>At1g21710.1 68414.m02718 8-oxoguanine-DNA glycosylase (OGG1)
           similar to SP|O15527 N-glycosylase/DNA lyase [Includes:
           8-oxoguanine DNA glycosylase (EC 3.2.2.-); DNA-(apurinic
           or apyrimidinic site) lyase (EC 4.2.99.18) {Homo
           sapiens}; contains Pfam profiles PF00633:
           Helix-hairpin-helix motif and PF00730: HhH-GPD
           superfamily base excision DNA repair protein; identical
           to cDNA 8-oxoguanine-DNA glycosylase (OGG1 gene)
           GI:16074116
          Length = 365

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 124 DFFNFRNYFVCFHRL*RVSIQDWKY*LYGSSTSYATDTSMALYAVPQIPSPWTL 285
           D F F   F    RL RVS ++++   +G    Y T T  AL A P   + W L
Sbjct: 186 DGFEFHQ-FPSLDRLSRVSEEEFRKAGFGYRAKYITGTVNALQAKPGGGNEWLL 238


>At5g10340.1 68418.m01199 F-box protein-related / SLF-related
           contains weak hit to Pfam  Pfam PF00646: F-box domain
           and to TIGRFAM TIGR01640 : F-box protein interaction
           domain; weakly similar to  self-incompatibility (S-)
           locus F-box (GI:29420811) [Prunus mume]
          Length = 445

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 183 SGLEILTIW--KLYVVCNRYLNGIVC 254
           + ++I T W  KLY VCN   +G++C
Sbjct: 157 ASVQIPTPWEDKLYFVCNTSCDGLIC 182


>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
           weak similarity to Pre-mRNA cleavage complex II protein
           Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
          Length = 808

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 230 QIPQWHCMRYRRFHPHGHCSRWHL 301
           ++P+  C+ YR+ HP  H S  HL
Sbjct: 142 RLPEVFCLAYRQAHPSLHPSMRHL 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,849,321
Number of Sequences: 28952
Number of extensions: 185719
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)