Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31854
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   5.1  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   5.1  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.7  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   8.9  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   8.9  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 416 WKYY-GITVTDDNLVVIDWR 472
           W Y  GI V DD + + DWR
Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = -3

Query: 409 RVLGGFSHLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS 230
           ++LGG SH+       D AV +E  + L      ET+   S++   + +        P +
Sbjct: 264 QILGGHSHIR------DFAVYDEASVSLEGGRYCETVGWLSIDGLSASNATRQYVGRPVT 317

Query: 229 HPARSPHENI 200
           +  R  + N+
Sbjct: 318 NETRQSYPNL 327


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 505 IVLG*RAADSLTPVN--HYQIVVSNRDAVVFPEDRV 404
           I +G   A + TP+   HY  V + R+ V+ PEDR+
Sbjct: 374 IGIGIVLAGACTPIIYVHYNRVYTRRNGVMSPEDRL 409


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 143  LQMEEAVKVFRVLYYAKDFD 202
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 492 KERRTPLRQSITTKLSSV 439
           KE+RT LRQ++ TKL S+
Sbjct: 117 KEKRTFLRQALETKLISL 134


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 379 HKGFTDDMAVNEEVGIDLVR 320
           H  +  D  VN+E+  DL+R
Sbjct: 631 HPSYKQDSVVNDEINYDLIR 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,886
Number of Sequences: 5004
Number of extensions: 34842
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)