BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31854 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 5.1 SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 5.1 SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 6.7 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 6.7 SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 25 8.9 SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 8.9 >SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 698 Score = 25.4 bits (53), Expect = 5.1 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%) Frame = +2 Query: 416 WKYY-GITVTDDNLVVIDWR 472 W Y GI V DD + + DWR Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336 >SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 25.4 bits (53), Expect = 5.1 Identities = 16/70 (22%), Positives = 30/70 (42%) Frame = -3 Query: 409 RVLGGFSHLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS 230 ++LGG SH+ D AV +E + L ET+ S++ + + P + Sbjct: 264 QILGGHSHIR------DFAVYDEASVSLEGGRYCETVGWLSIDGLSASNATRQYVGRPVT 317 Query: 229 HPARSPHENI 200 + R + N+ Sbjct: 318 NETRQSYPNL 327 >SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 541 Score = 25.0 bits (52), Expect = 6.7 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -3 Query: 505 IVLG*RAADSLTPVN--HYQIVVSNRDAVVFPEDRV 404 I +G A + TP+ HY V + R+ V+ PEDR+ Sbjct: 374 IGIGIVLAGACTPIIYVHYNRVYTRRNGVMSPEDRL 409 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 25.0 bits (52), Expect = 6.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +2 Query: 143 LQMEEAVKVFRVLYYAKDFD 202 L +E R +YY+KDFD Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183 >SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizosaccharomyces pombe|chr 1|||Manual Length = 421 Score = 24.6 bits (51), Expect = 8.9 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -1 Query: 492 KERRTPLRQSITTKLSSV 439 KE+RT LRQ++ TKL S+ Sbjct: 117 KEKRTFLRQALETKLISL 134 >SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 669 Score = 24.6 bits (51), Expect = 8.9 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -3 Query: 379 HKGFTDDMAVNEEVGIDLVR 320 H + D VN+E+ DL+R Sbjct: 631 HPSYKQDSVVNDEINYDLIR 650 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,895,886 Number of Sequences: 5004 Number of extensions: 34842 Number of successful extensions: 126 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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