Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31854
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40684| Best HMM Match : NIF (HMM E-Value=0) 30 1.3
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 4.0
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 28 5.3
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 5.3
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5) 28 5.3
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 27 6.9
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14) 27 6.9
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 27 9.2
>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 104 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 274
+L ET VH + ++E+A F V Y + VF+RT ++ ER++ V FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279
Query: 275 A 277
+
Sbjct: 280 S 280
>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1011
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 215 TACWMRERINGGMFVYAFTAACFHR 289
TAC+ + I+GG+ V+++ + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/64 (37%), Positives = 32/64 (50%)
Frame = +3
Query: 243 TEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMSSVKPL**R*LKPPRTRSSGN 422
TE +T LP +PT + P+ T IPT+ TAM+ KP R RTRS+ +
Sbjct: 306 TEKKPTTKQLPITEKKPTT--TKLPM-TEQIPTTKQTAMTEKKPTTER---KHRTRSTPD 359
Query: 423 TTAS 434
T S
Sbjct: 360 TPFS 363
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 261 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 353
+LLLP +A T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238
>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
Length = 289
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 382 HHKGFTDDMAVN-EEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHE 206
H KG + MA +E I + T S ++ S++ D H S SH +R P
Sbjct: 63 HEKGDQNPMATELDEKAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESHQSRKPDS 122
Query: 205 NIEVLS 188
+ +S
Sbjct: 123 HRSCIS 128
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 179 LYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 295
L+ ++F+V T C + ER N + + CF+ D
Sbjct: 70 LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 237 GSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMSS 365
G+TEA SS ++ AST T +T + PT + A S
Sbjct: 316 GTTEALSSQSVISNASTTSTTSATTIAATGATTPTDTTQATPS 358
>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
Length = 1087
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/108 (26%), Positives = 50/108 (46%)
Frame = +2
Query: 38 KSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRT 217
K +K MN++ + ME Y ML TF+ + ++ M +++ + Y +K F R
Sbjct: 662 KGEEKQMNINAIPNNMEKYMAFMLGNHLTFIDSFQV-MNFSLERLGLKYTSKSFK-GKRL 719
Query: 218 ACWMRERINGGMFVYAFTAACFHRTDCKGLYLPAPYEIYPYFFVDSHV 361
R+ G++ Y + + F R D K LPA + Y + D H+
Sbjct: 720 DLMARK----GVYPYDYMDS-FERFDDK---LPAKEDFYSIMY-DQHI 758
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 27.1 bits (57), Expect = 9.2
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 255 SSTLLLPRASTEPTARVSTCPL-----LTRSIPTSSLTAMSSVKPL**R*LKPPRTRSSG 419
SS L P T P+ S+ PL LT S P +S + ++S PL P SS
Sbjct: 182 SSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPL----TSPSPLTSSS 237
Query: 420 NTTASRLLTT 449
T+S LT+
Sbjct: 238 PLTSSSPLTS 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,800
Number of Sequences: 59808
Number of extensions: 273419
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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