Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31853
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   0.95 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   1.7  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.2  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   3.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   5.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   5.1  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   6.7  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 118 RYHSLCQFYNIHHQ--CLVGSHLG 53
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 37  KILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 195
           K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 619 KLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 516  NAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 412
            +A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 929  SALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 43  LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 135
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 13   PYLLKSKSKILSFFQDVSQLNTD 81
            P+ + S  K LSFF +V+++NT+
Sbjct: 1007 PFSMLSNLKSLSFFGNVTEINTN 1029


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 37  KILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 159
           K L   +  S       YYK+ K Y  + N D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 31  KSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNM----DNYTNKKAVEEFLKMYRTGFMPK 198
           KS + + +     L TD+        +D+ +N+    +NY  K  ++EFL   +  F+  
Sbjct: 523 KSNLPTLYHGSCALLTDNLVTVFLDAHDLVLNLNFSNENYIEKTYIDEFLDFIQPPFLNS 582

Query: 199 NLE 207
           ++E
Sbjct: 583 DIE 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,885
Number of Sequences: 5004
Number of extensions: 40643
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)