Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31853
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 32 0.24
06_02_0019 - 10656005-10657511,10657712-10658739 29 2.9
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 28 3.9
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 28 3.9
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 28 5.1
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 27 6.8
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635... 27 8.9
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 283 ETFYKTACFARVHLNQGQFLYAF-YIADIQRSDCHGF 390
ETF+ TAC R HL QG+ + A+ Y+ + DC GF
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GF 462
>06_02_0019 - 10656005-10657511,10657712-10658739
Length = 844
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/32 (31%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = -2
Query: 446 STSIFINILGY-TSYGAGTTKPWQSERWISAM 354
+T+I ++++G +YGAG+++ W++ ++ AM
Sbjct: 750 NTTIVLDMIGLLVAYGAGSSREWETSGYVIAM 781
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 507 LSCGFRINEAILHLCYVNFLQHFHIHKHFRVYFIR 403
L GFR++ A+ +LC + +L+ I K R IR
Sbjct: 1002 LKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 118 EMNMDNYTNKKAVEEFLKMYRTGF----MPKNLEFSVFYDKMRDEAI 246
E + Y NK +EFLK+ GF + K LE D M + A+
Sbjct: 695 ERDFRRYINKLGYKEFLKLPEMGFGTSLLQKRLEIETMTDNMSELAV 741
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 85 HHQCLVGSHLGRRTEFYFCFSTNTAST 5
H C VGS G R ++Y ST +A T
Sbjct: 472 HEDCSVGSFAGDRVDYYVRCSTRSAFT 498
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 501 CGFRINEAILHLCYVNFLQHFHIHKHFRVYFI-RSRNNETVAIRAL 367
C I+ L+ Y+ +QHFH+ + + RS+N+ T +I+ L
Sbjct: 278 CFMMISTKELYTIYITQVQHFHVGDNVTFTLLSRSKNSLTPSIKNL 323
>08_02_1457 +
27260841-27260965,27261126-27261246,27263455-27263543,
27263776-27263860,27263970-27264074,27264446-27264527,
27264573-27264686,27265029-27265330,27265519-27266114,
27266216-27266376,27266489-27266592,27266697-27266856,
27266942-27267105,27267213-27267545,27267640-27267930,
27268276-27268359,27268430-27268563,27268665-27268892,
27268993-27269164,27269263-27269517,27269778-27270047
Length = 1324
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 10 MPYLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 189
M + S+ + F Q+V+ D + Y IG N + Y ++E+F + +RT +
Sbjct: 325 MGFKCPSRKNVADFLQEVTS-KMDQKQYWIG-------NANKY-QYHSIEKFAESFRTSY 375
Query: 190 MPKNLE 207
+P+ +E
Sbjct: 376 LPRLVE 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,989
Number of Sequences: 37544
Number of extensions: 232115
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -