Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31853
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_58475| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)                     28   5.3  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        27   6.9  
SB_13261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_17848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 16  YLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDI 117
           + L+S+S+++   +DV Q N+D +YYK  K Y I
Sbjct: 480 FWLRSQSELVKTAKDVQQQNSDMKYYK--KQYTI 511


>SB_58475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 462 YVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDISDVEGI 343
           + + LQ FH+   FR+Y +    +E +A+R   I+++E +
Sbjct: 49  HTSTLQLFHVRGGFRLYQLYHTMDEHLAVRLQGITELEWV 88


>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
          Length = 965

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +1

Query: 25  KSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF----M 192
           K   K + +F D+   +TD+  +++   +     +++  N     E + M  T F     
Sbjct: 378 KETGKHMDYFSDIENCSTDNYDWRLTVMFLFCRTLEHADNTGFSPEQIPMQGTSFNYQAQ 437

Query: 193 PKNLEFSVFYDKMRD 237
            K +E+ V  D MRD
Sbjct: 438 DKAMEYQVAQDAMRD 452


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 379 CHGFVVPAPYEVYPKMFMNMEVLQKIYVTKMQDGLI 486
           C  F+V  P  +  K  +++  +QKI V+ ++DGL+
Sbjct: 849 CSEFIVADPKSMSAKYRVSLGDVQKISVSPLKDGLV 884


>SB_13261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 115 IEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALF 255
           +E N+ + ++   +    +M RTG    +   S FY K+ +E I ++
Sbjct: 27  LEENITDMSDFSVISNTEEMIRTGHNHSSSNSSEFYTKLSEETITIY 73


>SB_17848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = +2

Query: 239 KLLLYSIYSITLRTLKRSTRLPVLRVCISIK-------VNSCMPSTSLI 364
           +LLL S   +TL   +R +R   LR CI I+        NSC P   L+
Sbjct: 35  RLLLLSELQLTLSGSERKSRFEDLRQCIQIQGSNWYPPSNSCSPGDPLV 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,293
Number of Sequences: 59808
Number of extensions: 281492
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)