Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31853
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    32   0.28 
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     32   0.28 
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    32   0.28 
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    30   0.85 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    30   0.85 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   1.1  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   1.1  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   4.6  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    28   4.6  
U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g ...    27   6.0  
U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 486 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDISDVEGIQE 337
           N  I     V  L H HIH++ + +F+  + N TV   A D+S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 486 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDISDVEGIQE 337
           N  I     V  L H HIH++ + +F+  + N TV   A D+S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 486 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDISDVEGIQE 337
           N  I     V  L H HIH++ + +F+  + N TV   A D+S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +1

Query: 73  NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIAL 252
           +T D YY + + + + +    +TN   V+E +K Y     P + ++S       +EAIA 
Sbjct: 62  STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAY 109

Query: 253 FHLFYYAKD 279
           FH +Y  K+
Sbjct: 110 FHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +1

Query: 73  NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIAL 252
           +T D YY + + + + +    +TN   V+E +K Y     P + ++S       +EAIA 
Sbjct: 62  STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAY 109

Query: 253 FHLFYYAKD 279
           FH +Y  K+
Sbjct: 110 FHKYYEGKE 118


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 196 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 330
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 196 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 330
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 7   WMPYLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 183
           W P       + L+  +D   L + +EY  I +  D+  N   + N+ A  E L++ +T
Sbjct: 385 WQPLPFPGYEEYLNIKEDCDNLPSHEEYKTIREACDVFPNYTEFINRVANYEMLEIGKT 443


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 10  MPYLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 189
           +P  L+   +++ FFQ +  +N D E Y +  D        N   +    +F+   +TG 
Sbjct: 334 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 392

Query: 190 MPKNL 204
           + +N+
Sbjct: 393 LTRNV 397


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 10  MPYLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 189
           +P  L+   +++ FFQ +  +N D E Y +  D        N   +    +F+   +TG 
Sbjct: 334 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 392

Query: 190 MPKNL 204
           + +N+
Sbjct: 393 LTRNV 397


>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 516 NAILSCGFRINEAILHLCYVNFLQHFHIHK 427
           +AI+ CG  ++  +  LCY+NF Q   + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 46  SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 165
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 10  MPYLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 189
           +P  L+   +++ FFQ +  +N D E Y +  D        N   +    +F+   +TG 
Sbjct: 10  IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 68

Query: 190 MPKNL 204
           + +N+
Sbjct: 69  LTRNV 73


>U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g
           protein signalingprotein 5 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +1

Query: 19  LLKSKSKILSFFQDVSQLNTDDEY-YKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMP 195
           +LK +  +LSF + + +    D   + +G D   E N+D   + +A+ + + +Y   F  
Sbjct: 218 ILKVQPLLLSFLEFIKEKEDHDTIQFLLGCD-SFEANLDLMEDSEALGDAMALYEKYFSM 276

Query: 196 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFY--KTACFARVH 321
           +          +R E  +L        + + F   KTACF R+H
Sbjct: 277 QATNMIDLGSAIRAEMESLICEESGRPNRKAFRTAKTACFFRLH 320


>U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical
           protein F58F12.3 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 10  MPYLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYR 180
           +PYL+ +KS +L+ F+D+S+L    +  K  +D    M +D      A E  L+  R
Sbjct: 192 IPYLVDNKSGLLNRFKDISKL----DVIKTPRDQLWLMALDGMKTVDARESILQALR 244


>Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical
           protein K02E11.1 protein.
          Length = 729

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 352 YIADIQRSDCHGFVVPAPYEVYPKMFMNMEV 444
           Y+ D ++ + H FVVP  Y +    F+N  +
Sbjct: 576 YVKDAKKGELHSFVVPEKYFMDVVTFLNFNL 606


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,203
Number of Sequences: 27780
Number of extensions: 223978
Number of successful extensions: 655
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)