Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31853
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   0.46 
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    29   1.4  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    29   1.4  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   3.2  
At5g23840.1 68418.m02799 MD-2-related lipid recognition domain-c...    28   4.3  
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    28   4.3  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    27   5.7  
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At4g23930.2 68417.m03442 expressed protein hin1 protein homolog,...    27   9.9  
At3g20610.1 68416.m02608 non-race specific disease resistance pr...    27   9.9  

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 148 KAVEEFLKMYRTGFMPKNLEFSVFYD 225
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 429 KHFRVYFIRSRNNETVAIRALDISDVEGIQELTLIEMHTRKTGSLVERFKVLS 271
           K  R +  R  +     + AL  +DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 429 KHFRVYFIRSRNNETVAIRALDISDVEGIQELTLIEMHTRKTGSLVERFKVLS 271
           K  R +  R  +     + AL  +DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 168
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


>At5g23840.1 68418.m02799 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 167

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 260 YSITLRTLKRSTRLPVLRVCISIKV-NSCMPSTSLIS 367
           YS++LR      + P++++C+  KV +   P  +L+S
Sbjct: 130 YSVSLREKTSEEKNPIIKMCVDFKVPHPAFPPPALVS 166


>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 510 ILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 403
           +L  GFRIN AI  LC V F L H +   HFR  +IR
Sbjct: 107 LLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 455 IFCSTSIFINILGYTSYGAGTTKPW 381
           ++CS     + LGYT  GA T  PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +1

Query: 16  YLLKSKSKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL----KMYRT 183
           YL+  +S  L    ++  L  D  + K+     +++ +  YT K   E+FL    KM R 
Sbjct: 139 YLVAERSIDLGM-HEIDDLLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRK 197

Query: 184 GFMPKNLEFSVFYDKMRD 237
           GF+P     ++    +RD
Sbjct: 198 GFLPSVRNCNIVLKVLRD 215


>At4g23930.2 68417.m03442 expressed protein hin1 protein homolog,
           Oryza sativa, PIR:T02662
          Length = 160

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 166 LKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYY 270
           L +Y T F P++ E SV   K+   ++A   LFYY
Sbjct: 26  LTVYLTVFRPRDPEISVTSVKVPSFSVANSSLFYY 60


>At3g20610.1 68416.m02608 non-race specific disease resistance
           protein, putative similar to non-race specific disease
           resistance protein NDR1 [Arabidopsis thaliana]
           gi|2754816|gb|AAB95208
          Length = 222

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 91  YKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEF 210
           YK+    ++E+N D  T  K  E+ +KM  +   P+ L F
Sbjct: 162 YKLKASVNLEVNEDGATKVKDKEDGIKMKISDSSPQRLTF 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,194
Number of Sequences: 28952
Number of extensions: 198126
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)