Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31850
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0353 - 12856385-12857705,12858007-12858959                       28   5.1  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    28   5.1  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    27   6.8  
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868...    27   8.9  
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528...    27   8.9  
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    27   8.9  

>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 413 GCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 318
           GC+W   G    GQ   A S VS T    E+L
Sbjct: 172 GCEWSDPGFFLRGQEEEASSSVSTTTAMEEIL 203


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 449 VCGCDHLAGNVCGCDWHGNGRLHDGQGNNAG 357
           VC C H  G++C CD    G+  D    + G
Sbjct: 8   VCSCPHYKGSLCFCDCGCFGQTPDSPRESRG 38


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 474 WVGPPCWQRMWV*P 433
           W    CWQRMWV P
Sbjct: 14  WPTASCWQRMWVHP 27


>10_08_0518 +
           18486315-18486462,18486495-18486712,18486763-18486808,
           18487436-18487709,18487797-18488052
          Length = 313

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 30  LAICLSLTVALAAETGKYTPFQYNRVYS---TVSPFVYK-PGRYVADPGRYDPSR 182
           LAI  +L V   +    Y+  Q  ++YS   TV   V + PGR  AD G+YD  R
Sbjct: 112 LAILDALAVPKVSSFESYSCMQTVKLYSLIVTVEELVLQQPGRAEADFGKYDIRR 166


>05_04_0345 +
           20451497-20451740,20452078-20452159,20452837-20452882,
           20453669-20454352
          Length = 351

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 415 HTLPARWSHPHTLP 456
           H LP +W+HP T+P
Sbjct: 145 HQLPQKWAHPITMP 158


>03_05_1143 +
           30709825-30709926,30710105-30710260,30710356-30710439,
           30710769-30710882,30711019-30711111,30711888-30711977,
           30712157-30712227,30712300-30712374,30712481-30712568,
           30712748-30712806,30712893-30712956,30713030-30713095,
           30713283-30713435,30713522-30713626,30713739-30713974,
           30714104-30714173,30714286-30714339,30714501-30714557,
           30714662-30714741,30716056-30717919
          Length = 1226

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 125 WRNSRVNSVVLERSVLS---SFGGQRHCQRQADCQKDT 21
           W+++ V  V+  R + S   S  GQ+ C RQ  CQ  T
Sbjct: 28  WKDNNVQVVIRVRPLSSGEISVQGQKRCVRQDSCQSIT 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,668
Number of Sequences: 37544
Number of extensions: 218621
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)