BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31849 (516 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF039716-6|AAY55880.1| 215|Caenorhabditis elegans Hypothetical ... 27 6.0 >AF039716-6|AAY55880.1| 215|Caenorhabditis elegans Hypothetical protein W03G9.9 protein. Length = 215 Score = 27.5 bits (58), Expect = 6.0 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 101 STKVYTQIKKYFAQIFTMPTINNYTELLT 187 +T ++IKK+ QIF +PTIN +++T Sbjct: 68 ATTTPSKIKKFVFQIFIVPTINFRIKVIT 96 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,775,748 Number of Sequences: 27780 Number of extensions: 207859 Number of successful extensions: 410 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 401 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 410 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 996506972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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