Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31848
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 173 1e-44
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 173 2e-44
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.18
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.24
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 2.2
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 2.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 2.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 2.9
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 3.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 5.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.7
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 8.9
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 8.9
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 25 8.9
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 173 bits (422), Expect = 1e-44
Identities = 85/135 (62%), Positives = 105/135 (77%), Gaps = 2/135 (1%)
Frame = +1
Query: 118 STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 297
++R + V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SWR
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWR 63
Query: 298 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 471
++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVFY
Sbjct: 64 IVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFY 123
Query: 472 LKMKGDYYRYLAEVA 516
KMKGDYYRYLAE A
Sbjct: 124 YKMKGDYYRYLAEFA 138
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 173 bits (420), Expect = 2e-44
Identities = 85/133 (63%), Positives = 105/133 (78%), Gaps = 2/133 (1%)
Frame = +1
Query: 118 STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 297
++R V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+SWR
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWR 62
Query: 298 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 471
+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKVFY
Sbjct: 63 IISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122
Query: 472 LKMKGDYYRYLAE 510
KMKGDYYRYLAE
Sbjct: 123 YKMKGDYYRYLAE 135
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/94 (21%), Positives = 38/94 (40%)
Frame = +1
Query: 118 STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 297
S E + R + + Y+ MA + E E ++ + LLS Y N +R
Sbjct: 3007 SAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYR 3066
Query: 298 VISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 399
+ + +E+ + EY +E+ L++ C
Sbjct: 3067 LSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 139 QRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 306
++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V S+W S
Sbjct: 11 EQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 262 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 378
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 313 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 489
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 490 YYR-YLAEV 513
+R Y+ E+
Sbjct: 100 SFRDYVGEL 108
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.9
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +1
Query: 124 RXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 303
+ E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 321 KQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSHH 375
Query: 304 SSIEQKTEGSE---RKQQMAKEYRVKVEKELR 390
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 376 SESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 316 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 441
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 250 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 384
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 334 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 456
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 2 AVEVDGLK*NKKSVCTPRQRVSII 73
AVEVDG+ N + RQR+S+I
Sbjct: 1237 AVEVDGIDINSLDLEVLRQRISLI 1260
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 62 PAVLECKHFFY-FISNHLPQP 3
PA+L+C+HF+ F+ L QP
Sbjct: 457 PALLDCRHFWISFLRFELEQP 477
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 406 VLGLLDKHLIPKASN-PESKVFYLKMKGD--YYRYL 504
VL L+ L+ A+ PE K+FY K GD Y +YL
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYL 544
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 418 LDKHLIPKA--SNPESKVFYLKMKGDYYRYLA 507
+++H + K+ S P S+ YLK+ YR+LA
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLA 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,835
Number of Sequences: 5004
Number of extensions: 36687
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -