Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31841
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   1.8  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   2.4  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    24   5.6  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    23   7.5  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   7.5  

>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 155 FMYIIFGVYSFRIDLHI 205
           F  ++FG+YSF + LH+
Sbjct: 21  FFLVVFGLYSFTLILHL 37


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 273 RITHFVSHGSTILVPIIFIPRAY 205
           R+THF ++   +  P+IF+P+ +
Sbjct: 270 RLTHFFTNMPLLCGPLIFVPKLW 292


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 79  IKLDPIIQQCFNNFCYCSYF*IKLPIYVYNFWS 177
           +K+D  ++ CF+ F       I++PI + + W+
Sbjct: 394 LKIDYTLEVCFSAFFKPRILSIQIPITILHSWN 426


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 37  CLSAINAXRCHSSLIKLDPIIQQCFNNFCYCSY 135
           C    NA   H++ +     I+ CF+   YC Y
Sbjct: 108 CWIFTNAYIVHANRVLKYLGIEDCFDGITYCDY 140


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 79  IKLDPIIQQCFNNFCYCSYF*IKLPIYVYNFWSLLL*NRFTYIGPG 216
           IK    +++ F +F    +  I  P   + FW  +  N  T  GPG
Sbjct: 270 IKTGLTVERFFQHFLARFFCLIFFPFLFFLFWFYMHFNILTISGPG 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,830
Number of Sequences: 5004
Number of extensions: 23707
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)