Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31841
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0216 - 1615604-1615626,1615835-1617782                           27   3.7  
07_01_1153 - 10842259-10842390,10843348-10845315                       26   4.9  
07_01_0235 - 1719447-1721491,1721986-1722097                           26   6.5  
07_01_0224 - 1646114-1648396                                           26   6.5  
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794...    26   6.5  
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    26   6.5  
07_01_0221 - 1635381-1637477                                           25   8.6  
07_01_0215 - 1607473-1609494                                           25   8.6  
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     25   8.6  

>07_01_0216 - 1615604-1615626,1615835-1617782
          Length = 656

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 283 RNQAHNAFRVTW*YDFGPHNFHTPGLYM*IDSKGVNSKNYI 161
           R   +   R  W  DFGPH F    L+    ++G  +KN +
Sbjct: 318 RRMRYTELREDWEIDFGPHRFAYKDLFH--ATEGFQNKNLL 356


>07_01_1153 - 10842259-10842390,10843348-10845315
          Length = 699

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 283 RNQAHNAFRVTW*YDFGPHNFHTPGLY 203
           R+  +   R  W  +FGPH F    LY
Sbjct: 316 RHMRYTELREDWEVEFGPHRFSYKDLY 342


>07_01_0235 - 1719447-1721491,1721986-1722097
          Length = 718

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 259 RVTW*YDFGPHNFHTPGLY 203
           R  W  DFGPH F    LY
Sbjct: 379 REDWEIDFGPHRFSFKNLY 397


>07_01_0224 - 1646114-1648396
          Length = 760

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 283 RNQAHNAFRVTW*YDFGPHNFHTPGLYM*IDSKGVNSKNYI 161
           R Q +   R  W  +FGPH F    L+    ++G  SK+ +
Sbjct: 405 RQQRYAELREDWEVEFGPHRFSYKDLFN--ATEGFKSKHIL 443


>04_03_0083 +
           10878487-10878714,10878781-10879223,10879267-10879423,
           10879573-10880433
          Length = 562

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 138 KVRTIAKIVKALLNNWVKFD*TRMASXCIDCT*TGIH*FRNKK 10
           +V T A+ +K +LNN      T M +   +C+   +H  R KK
Sbjct: 408 RVPTYARYLKDILNNKRALPTTEMVNLTEECSNAILHRLREKK 450


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 10  FFISKLMDSCLSAINAXRCHSSLIKLDPIIQ--QCFNNFC 123
           F + KL+D+    +   RC ++ +++D   Q   CF  FC
Sbjct: 296 FALQKLLDAMPDLVYCPRCSAACLEVDNDAQCPGCFFTFC 335


>07_01_0221 - 1635381-1637477
          Length = 698

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 283 RNQAHNAFRVTW*YDFGPHNFHTPGLYM*IDSKGVNSKNYI 161
           R   +   R  W  +FGPH F    L+   D  G  S N +
Sbjct: 343 RRMRYTELREDWEVEFGPHRFSYKDLFRATD--GFKSMNLV 381


>07_01_0215 - 1607473-1609494
          Length = 673

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 298 ISCHMRNQAHNAFRVTW*YDFGPHNFHTPGLYM*IDSKGVNSKNYI 161
           + C  R   +   +  W  +FGPH F    LY    ++G   KN +
Sbjct: 308 VLCVRRRLKYTEIQEDWEVEFGPHRFSYKVLY--DATEGFKDKNLL 351


>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 82  KLDPIIQQCFNNFCYCSYF 138
           KLDP +Q+C   F YCS F
Sbjct: 441 KLDPCLQRC---FLYCSLF 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,406,004
Number of Sequences: 37544
Number of extensions: 124826
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)