Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31841
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)                    27   2.2  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.7  
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 25   8.9  
SB_56355| Best HMM Match : U-box (HMM E-Value=0.00021)                 25   8.9  
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    25   8.9  

>SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)
          Length = 582

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 95  LFNNALTIFAIVRTFELSFQFMYIIFGVYSFRIDL 199
           LF  A   F + +   LSF FMY++F +Y++  D+
Sbjct: 542 LFLMAAFKFKLNKRLGLSFVFMYVLFVLYAYIQDI 576


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 13  FISKLMDSCLSAINAXRCHSSLIKLDPIIQQCFNNFCYC 129
           F+S   D  + AI    CH  ++  DPI+  C +++C C
Sbjct: 20  FLSPPSDDSMCAI----CH--IVVKDPILTSCGHSYCKC 52


>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 234 VPIIFIPRAYICKSILKE*TPKIIYINWKLNSKVRTIAKIVKAL 103
           VPII I   ++C  +LK   PK I  N   +  VR  + I+K +
Sbjct: 339 VPIIQILFQFVCHFVLKGMLPKFIN-NGNADGNVRISSVIMKEM 381


>SB_56355| Best HMM Match : U-box (HMM E-Value=0.00021)
          Length = 191

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 16  ISKLMDSCLSAINAXRCHSSLIKLDPIIQQCFN 114
           + ++++  L+ IN  + HSS+ +LD +I+   N
Sbjct: 90  LDEVIEVVLNTINVFQRHSSVQRLDEVIEVVLN 122


>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 95  LFNNALTIFAIVRTFELSFQFMYII-FG 175
           LF+  LT+F I+R F+ S  F  ++ FG
Sbjct: 424 LFSTRLTMFHIIRLFKASLVFAILVTFG 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,222
Number of Sequences: 59808
Number of extensions: 157257
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)