Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31841
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical ...    29   0.49 
U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    29   0.64 
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr...    27   2.6  

>AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical
           protein T23E7.2d protein.
          Length = 118

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 124 YCSYF*IKLPIYVYNFWSLLL*NRFTYIGPGYENYGDQNRTTM*HEMRYAPD 279
           YC  +    P Y+YN ++L L  +  Y  P  E++   NR  +   + Y  D
Sbjct: 20  YCIPYFFYYPFYLYNVYTLSLITKSPYTPPNMEDHRLINRPEIRRSIAYTLD 71


>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 70  SSLIKLDPIIQQCFNNFCYCSYF*IKLPIYVY 165
           +SL+K+ P IQ CFN+  + S   +++ I V+
Sbjct: 88  TSLLKIPPNIQSCFNDIDFTSLLNLRVVILVH 119


>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
            K12D12.2 protein.
          Length = 1696

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = -1

Query: 206  IYVNRF*RSKLQKLYT*IGSLIQKYEQ*QKLLKHC*IIGSSLI 78
            +Y+NR  R +++ +YT  G +    ++ + +L++C  I +SL+
Sbjct: 1220 LYLNRLLRREIETVYTESGEMKYVQKEMEGVLEYCAEINASLL 1262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,141
Number of Sequences: 27780
Number of extensions: 130726
Number of successful extensions: 230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)