Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31841
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +1

Query: 115 NFCYCSYF*-IKLPIYVYN 168
           N   C +F  IK PI++YN
Sbjct: 89  NLAICDFFMMIKTPIFIYN 107


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 168 FLEFTPLESIYIYRPGV*KLWGPKSYYHVTR 260
           F+E   L + Y Y   +   W   S YH+ +
Sbjct: 224 FMEDVELNAYYYYMREMLPYWMSSSQYHMPK 254


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 168 FLEFTPLESIYIYRPGV*KLWGPKSYYHVTR 260
           F+E   L + Y Y   +   W   S YH+ +
Sbjct: 224 FMEDVELNAYYYYMREMLPYWMSSSQYHMPK 254


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 68  ILV*SNLTQLFNNALTIFAIVRTFELSFQFMYII 169
           ILV      LF N L I A+VR   L     Y I
Sbjct: 192 ILVIVPCLTLFGNVLVILAVVRERALQTVTNYFI 225


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 86  LTQLFNNALTIFAIVRTFELSF 151
           + ++  +ALT   ++RTF  S+
Sbjct: 249 IVEIAGDALTGLTVLRTFNASY 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,612
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)