Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31841
         (302 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    27   3.2  
At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT) id...    26   4.2  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    26   4.2  
At5g35540.1 68418.m04228 hypothetical protein                          26   5.6  
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co...    25   7.4  
At3g45440.1 68416.m04905 lectin protein kinase family protein co...    25   7.4  
At5g24750.1 68418.m02921 expressed protein                             25   9.7  

>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 174 PKIIYINWKLNSKVRTIAKIVKALLNNWVKFD 79
           PK  +I  K  +K   + KIV+A+   W+KFD
Sbjct: 254 PKRRFIPSKWEAK--KVVKIVRAIRKGWIKFD 283


>At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT)
           identical to SP|Q9FIT4 BROTHER of FT and TFL1 protein
           {Arabidopsis thaliana}; contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 177

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 79  IKLDPIIQQCFNNFCYCSYF*IKLPIYVYNF 171
           +K  P  ++CFN   + SYF +  P+    F
Sbjct: 133 VKAAPETRECFNTNAFSSYFGLSQPVAAVYF 163


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 85  LDPIIQQCFNNFCYCSYF 138
           L P   + ++N CYCSY+
Sbjct: 628 LGPFFVKDYDNICYCSYY 645


>At5g35540.1 68418.m04228 hypothetical protein
          Length = 189

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 44  VQSMQXDAILV*SNLTQLFNNALTIFAIVRTFELSFQFMYIIFGVY 181
           + S+    +L+  ++ + F     +  ++ TFE SF F+Y +F V+
Sbjct: 125 IHSLGMKNVLIDMSVEERFGLIKNLLYMIITFEFSFIFIYQLFLVW 170


>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
            contains weak similarity to Peroxisomal membrane protein
            2 (22 kDa peroxisomal membrane protein)
            (Swiss-Prot:P42925) [Mus musculus]
          Length = 1087

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 13   FISKLMDSCLSAINAXRCHSSLIKLDPIIQQCFNNFCYCSYF 138
            F  KLMD+           +  + L+ +    +NNF + SY+
Sbjct: 972  FFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYY 1013


>At3g45440.1 68416.m04905 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and PS00108: Serine/Threonine protein
           kinases active-site signature, PROSITE:PS00108
          Length = 669

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 283 RNQAHNAFRVTW*YDFGPHNFHTPGLYM*IDSKGVNSKNYIHK 155
           R + +   R  W  ++GPH F    LY  I + G N    + K
Sbjct: 310 RRRKYAEIREEWEKEYGPHRFSYKDLY--IATNGFNKDGLLGK 350


>At5g24750.1 68418.m02921 expressed protein
          Length = 520

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  FYFEINGFLFKCNQCXTMPF 71
           F+F  N + F CN+C   PF
Sbjct: 259 FWFLPNEWQFSCNECGDNPF 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,323,488
Number of Sequences: 28952
Number of extensions: 113467
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)