BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31836 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 2.9 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 2.9 SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7 SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 6.7 SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 6.7 SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 8.9 >SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 553 Score = 26.2 bits (55), Expect = 2.9 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 75 SVKLSDTECWKSSSRSKYWNSHHFEKKTEV 164 S ++ D K +KY+NS HFE K V Sbjct: 108 SHRIKDKITTKCKGTTKYFNSRHFEIKNAV 137 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 26.2 bits (55), Expect = 2.9 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 269 LVAVNVSCHVTLFDRSIVPTL*SNEFLEIK 180 LVAVN CH+ ++ +V S +F E K Sbjct: 126 LVAVNPYCHLPIYGDDVVRKYQSKQFKETK 155 >SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 575 Score = 25.0 bits (52), Expect = 6.7 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Frame = +3 Query: 102 WKSSSRSKYWNSHHFEKKT--EVILRLE 179 WKS S +N H F KK +I+ LE Sbjct: 240 WKSRSSDSKYNDHQFVKKNFFSIIMVLE 267 >SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1396 Score = 25.0 bits (52), Expect = 6.7 Identities = 8/24 (33%), Positives = 13/24 (54%) Frame = +1 Query: 280 CCHCEYPNPYQLLLNYVLSYAEKW 351 C +C Y N +L++ + Y KW Sbjct: 1334 CQYCPYKNADELMVGFGYHYNHKW 1357 >SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pombe|chr 1|||Manual Length = 649 Score = 25.0 bits (52), Expect = 6.7 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = -3 Query: 187 RSNSNLKITSVFF--SK*CEFQYLDREDD 107 +S+ N + T +F+ S E QYLD EDD Sbjct: 616 KSDKNTQSTLLFYDPSSTTEAQYLDNEDD 644 >SPBC4B4.04 |||translation initiation factor eIF2A |Schizosaccharomyces pombe|chr 2|||Manual Length = 576 Score = 24.6 bits (51), Expect = 8.9 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = +1 Query: 214 GTIDLSNKVT*QLTLTATSKV*CCHCEYPNPYQLLLNYVLS 336 G+ID+ + +T C +CE+ Q LL V S Sbjct: 334 GSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTS 374 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,878,192 Number of Sequences: 5004 Number of extensions: 34405 Number of successful extensions: 64 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 64 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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