Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31836
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    28   3.2  
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ...    27   7.5  

>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 111 SSRSKYWNSHHFEKKTEVILRLEFDLKKFIRLQCWHY*SVKQSDVTTDIDGY 266
           S++++ W    F+K+   +  LE  +    R +C    ++K  D+T D+ G+
Sbjct: 191 STKTQTWKPVPFQKRIFGVGDLEGKIYTICRTECGQGVTIKPKDLTCDVVGF 242


>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 214

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 78  VKLSDTECWKSSSRSKYWNSHHFEKKTEVILRLEFDLKKFI 200
           V LS    W++  +SK W+S    KK++V + +EFD+K+ I
Sbjct: 114 VTLSIDFDWRTGVQSKSWSS--VAKKSQVEV-MEFDVKRLI 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,325,239
Number of Sequences: 28952
Number of extensions: 162798
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)