Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31833
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.9  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 282 RRERSAALGACTSEVEQFIVGCFHVVQGALDAVVDISSNTFA 157
           R ++ A L AC+SEV  F +   + VQ   D+++ +++  ++
Sbjct: 384 REDQIALLKACSSEVMMFRMARRYDVQ--TDSILFVNNQPYS 423


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -1

Query: 516 ALFCAFFVILQSTSGAADFRVTN 448
           A FC   VI     G+ DF   N
Sbjct: 66  AFFCTALVIFYCQEGSVDFLFDN 88


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -1

Query: 516 ALFCAFFVILQSTSGAADFRVTN 448
           A FC   VI     G+ DF   N
Sbjct: 299 AFFCTALVIFYCQEGSVDFLFDN 321


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -1

Query: 516 ALFCAFFVILQSTSGAADFRVTN 448
           A FC   VI     G+ DF   N
Sbjct: 299 AFFCTALVIFYCQEGSVDFLFDN 321


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 184 CRHQLEYFR 158
           CRH +EYF+
Sbjct: 148 CRHTVEYFQ 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.130    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,848
Number of Sequences: 336
Number of extensions: 1725
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)