Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31833
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 31 0.10
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.31
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.41
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 29 0.55
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 1.3
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 2.9
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 3.8
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 26 3.8
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 26 3.8
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 6.7
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 6.7
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 6.7
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 6.7
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 6.7
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 8.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.9
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.9
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.9
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 8.9
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 31.1 bits (67), Expect = 0.10
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Frame = +1
Query: 40 VGRTRRTRVYDCNYNKGESYYRPVLDRLDGKAPIVR-----EPERESIRA-DVDNRIKSA 201
V T ++RV + + Y D LD P+ +PE S A D I
Sbjct: 401 VPETDKSRVLNLLAMAEDDEYDDTYDDLDTTGPVDSGVGDDDPEASSKDAHDFQKFINQT 460
Query: 202 LHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITESLKRL--RASKKTSRFADDI 375
L+D N E+FD + +++ L + L++ +E I E +R+ SK ++
Sbjct: 461 LYDFYQQNPEVFDQKARKSKERADLLAKLDNSLTHEQI-EGWRRMFTTDSKFAEAVKKEV 519
Query: 376 DFENSVTNL 402
F + TN+
Sbjct: 520 TFGSGNTNI 528
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 29.5 bits (63), Expect = 0.31
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 190 IKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITESLKRLRASKKTSRFAD 369
I S L D + D R R R SS +DD+ + E + RA + SR+ D
Sbjct: 132 ITSLLEDEHALKEARGDSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDD 191
Query: 370 D 372
D
Sbjct: 192 D 192
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.41
Identities = 22/99 (22%), Positives = 41/99 (41%)
Frame = +1
Query: 142 VREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITE 321
+++ +++ ++D R+ + E ND DF Q LS + F E
Sbjct: 288 IKKSKKKKSKSDRRKRLVELDAENENENDPS-DFVLPNGQSNSDLSVEQDSAIFKEQKKM 346
Query: 322 SLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE 438
+++ +T FADD D + S+ + KIL+
Sbjct: 347 KIQKRMRELETQSFADDDDLQQSIAMQRRLAQKRAKILK 385
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 28.7 bits (61), Expect = 0.55
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 447 PDAFEYFVRNPHSVFEIGDAVLKVDVVSEPRSLFARAQAFQRFCDV 310
PD F+RN +S+F+I A L V V E Q F R ++
Sbjct: 442 PDFVTTFLRNANSIFKIRGASLSVQGVDELPFKMLFMQLFDRILEI 487
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 289 EDDEFNEDITESLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE 438
ED+E+N T+ +++ SKK ++ ++ + L +MR + K LE
Sbjct: 390 EDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKKD-RKLPKKMRKAQKKLE 438
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +1
Query: 274 LSSALEDDEFNEDITESLKRLRASKKT------SRFADDIDFENSVT 396
L+ L+ +E+++ SL++ R K S F DD+DFENS++
Sbjct: 108 LNEKLDLEEWHQKFWWSLRKKRNLPKENSELDLSNFQDDLDFENSIS 154
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 242 KSNSSSLGVSMSCRALLMRLSTSARILSRSGSRTIGALPSK 120
KS+SSS S + STS+R S S S ++ +L SK
Sbjct: 407 KSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 79 YNKGESYYRPV----LDRLDGKAPIVREPERESIRADVDN 186
Y ++YY + LDR+ + V E +S++ D+DN
Sbjct: 377 YGSADTYYERITQILLDRISSLSESVNEQNIKSLQTDIDN 416
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 414 HSVFEIGDAVLKVDVVSEPRS 352
HS F +GDAVL+ V PRS
Sbjct: 301 HSAFCLGDAVLRRFVFRSPRS 321
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 306 VKFIVFQGRRERSAALGACTSEVEQFIVG 220
+KFIV+ G R+ +A + + S + I+G
Sbjct: 53 IKFIVWHGSRKHNACIRSVYSIINNMIIG 81
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 306 VKFIVFQGRRERSAALGACTSEVEQFIVG 220
+KFIV+ G R+ +A + S + I+G
Sbjct: 53 IKFIVWHGSRKHNACIRTAYSIINNMIIG 81
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 6.7
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +1
Query: 223 NDELFDFRGARAQRGRPLSSALEDDEFNE-DITESLKRLRASKKTSRFADDIDFENSVTN 399
+D+ FD++ + ++G+ EDDE E + + K L A T D+ D++
Sbjct: 96 DDDEFDYKPKKGKKGKKSKKVEEDDEPQEIESPQGPKELTA--VTELDDDEFDYKPKKGK 153
Query: 400 LENRMRISDKILESVGIGHSEVSSARRALQDNEERTEK 513
+ + ++ ES E+ R + +ER +K
Sbjct: 154 KGKKAQNNN---ESEAAAPPEIPEVRVKTKKEKEREKK 188
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 146 ANPNAKVFELMSTTASRAPCTTWKHPTM 229
A+P+AK STT S P ++ KH T+
Sbjct: 397 ADPSAKPGATASTTPSEPPPSSIKHKTL 424
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 508 LCVLRYPAEHVWRC*LPS--DQSRRFRVFCQK 419
LC LR +W C LPS D++ + +F +K
Sbjct: 96 LCQLRLTNMKLWNCKLPSLKDEAEFYSLFSKK 127
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 474 GAADFRVTNPDAFEYFVRNPHSVFEIGDAVLKVDVVSE 361
G ADFRVTN + +V + E G+ + VV E
Sbjct: 557 GVADFRVTNVQVYAGYVLHT-GFLEYGNLTVNDSVVCE 593
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 268 RPLSSALEDDEFNEDITESLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE--- 438
+P+S+ + FN D +E + S + D++ + V+ +R+S + +E
Sbjct: 24 QPVSAKPSETAFNSDASEKEQSPTTSNEEEDAISDMEDKEDVSFGSKILRVSHQEVEKPT 83
Query: 439 -SVGIGHSEVSSARRALQDNEERTEKR 516
S +G L+D EE K+
Sbjct: 84 LSATVGRVSFLKKMPKLEDEEEILAKK 110
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 8.9
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 RAQRGRPLSSALEDDEFNEDITESLKRL-RASKKTSRFADDIDFENSVTNLEN 408
+AQ R L S D + NED + KRL A K+ R D+ T +N
Sbjct: 18 KAQAERVLISVHADSDVNEDKEVARKRLGYALKEVERQITDLIVHEETTLTKN 70
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +1
Query: 160 ESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNED 312
+ D D + S LH + D F R SSA DD F +D
Sbjct: 179 DDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDD 229
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 187 RIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITESL 327
R K L+ +E LF +GRP++ L D+F+ D +++L
Sbjct: 148 RQKFLLYLLEKYQINLFHREERLTDQGRPVAFELPPDKFHSDQSKAL 194
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 196 SALHDMETPNDELFDFRGARAQRG-RPLSSALEDDEFNEDITESLKRLRASKKTSR 360
SAL +DE D+ G+ + +S EDD NE+ E+LK + +K +
Sbjct: 58 SALQAEGLWSDEESDYEGSDDESNFSKTASRTEDDIANEEWEENLKAVAGFRKVRK 113
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 248 VHAPSAADLSLLPWKTMNLTKTSQNR 325
V + SAAD ++ WK N + +QN+
Sbjct: 99 VASSSAADNEIVDWKANNSNEKAQNK 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,390
Number of Sequences: 5004
Number of extensions: 31907
Number of successful extensions: 98
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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