Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31832
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...   103   2e-23
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    57   1e-09
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    57   2e-09
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    55   7e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    41   1e-04
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    33   0.025
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    31   0.10 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   0.31 
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   1.7  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    27   1.7  
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    26   3.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   5.1  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   6.7  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   6.7  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    25   8.9  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score =  103 bits (246), Expect = 2e-23
 Identities = 50/144 (34%), Positives = 86/144 (59%)
 Frame = +2

Query: 59  QIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPE 238
           QIA  R+AF  FD ++ G+I  + +  ++R +GQ      L+++I EVDAD +G ++F E
Sbjct: 10  QIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTE 69

Query: 239 FVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXX 418
           F+T+ A+ + + D E   +E+REAF+++DK+GNGYI    L  +                
Sbjct: 70  FLTMMARKMKDTDNE---EEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADM 126

Query: 419 IQEIDTDGSGTVDFDEFMEMMTGE 490
           I+E DTDG G ++++EF  +++ +
Sbjct: 127 IREADTDGDGVINYEEFSRVISSK 150


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +2

Query: 59  QIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPE 238
           +I  +RK F   D N+SGSI  +    I  +   P    +   L   VD D  G ++F E
Sbjct: 22  EIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNP----LASRLFSVVDEDGGGDVDFQE 77

Query: 239 FVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSL-----REIXXXXXXXXXXX 403
           F+   + F V  + E   ++L+ AF++YD + +GYI    L       +           
Sbjct: 78  FINSLSVFSVHGNKE---EKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134

Query: 404 XXXXXIQEIDTDGSGTVDFDEFMEMMTG 487
                I E+D D  G + F+EF ++++G
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEFKDIVSG 162


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 35/140 (25%), Positives = 64/140 (45%)
 Frame = +2

Query: 71  LRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTL 250
           + +AF  FD ++  +I    +   +R +G    K  + +++ + D    G L+  +FV +
Sbjct: 39  INEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRV 98

Query: 251 AAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEI 430
             + IVE D     +E++ AF L+D +  G I   +LR +                I+E 
Sbjct: 99  MTEKIVERDP---LEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEF 155

Query: 431 DTDGSGTVDFDEFMEMMTGE 490
           D D  G ++  EF+ +M  E
Sbjct: 156 DLDQDGEINEQEFIAIMMDE 175



 Score = 33.9 bits (74), Expect = 0.015
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +2

Query: 272 EDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGT 451
           E  E  ++++ EAF+L+D + +  I    LR                  +++ D  G G 
Sbjct: 30  EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89

Query: 452 VDFDEFMEMMT 484
           +  ++F+ +MT
Sbjct: 90  LQMEDFVRVMT 100


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 35/145 (24%), Positives = 69/145 (47%)
 Frame = +2

Query: 41  MSCPQXQIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSG 220
           M   + Q   +++AF  +D ++ G IP   V  +LR +G       L +L  E+      
Sbjct: 1   MPASKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GD 56

Query: 221 RLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXX 400
            ++  +F++  +  + E ++E   +E  +AFR++DK+ +GYI T+   +           
Sbjct: 57  AIDEKKFMSFVSNKLRETESE---EEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSD 113

Query: 401 XXXXXXIQEIDTDGSGTVDFDEFME 475
                 +QE D   SG+ D+ +F++
Sbjct: 114 NEVQLMVQEADPTNSGSFDYYDFVQ 138


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 30/136 (22%), Positives = 62/136 (45%)
 Frame = +2

Query: 74  RKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLA 253
           ++AF  FD + +G IP   + D+LR  GQ  N  + E  I E+++     ++  +F+ + 
Sbjct: 9   KQAFSLFDRHGTGRIPKTSIGDLLRACGQ--NPTLAE--ITEIESTLPAEVDMEQFLQVL 64

Query: 254 AKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEID 433
            +     D     +E  + F+++DK+  G I    LR +                ++ + 
Sbjct: 65  NR-PNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123

Query: 434 TDGSGTVDFDEFMEMM 481
               G V++ +F++M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 33.1 bits (72), Expect = 0.025
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 182 EELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSL 361
           E +    DADK+G ++F EF+   +   V    E +  +L  AF+LYD + NG I    +
Sbjct: 66  EYVFNVFDADKNGYIDFKEFICALS---VTSRGE-LNDKLIWAFQLYDLDNNGLISYDEM 121

Query: 362 REI 370
             I
Sbjct: 122 LRI 124


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 83  FDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEF 241
           ++  +  +S  +    V  + +M+    + + LEE  ++ DAD SG+L F EF
Sbjct: 303 WEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLEETFQKADADHSGKLSFEEF 355


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 469  ELVEVDGAASVSV-DLLDEAIEFIVSQLLVQFPEDLAQARRGNVTVAFLVVQSERFPEFF 293
            EL  V   A  S  DL D AI   ++Q+L  F +DL +     VT+    +    +P ++
Sbjct: 1246 ELTNVVNVALTSTGDLDDSAIVSKLNQILSDFRDDLLEHNVRRVTIVGGRINKSAYPSYY 1305

Query: 292  LHGLS 278
             + +S
Sbjct: 1306 TYRVS 1310


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +2

Query: 20  WTPKTGPMSCPQXQIAVLRKAF--DGFDHNRSGSIPCD 127
           W P  G   C Q  +A + K F  D   H+   SI CD
Sbjct: 62  WKPNLGAEKCHQICVASVDKVFVLDIVQHDYYASIQCD 99


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 293 KELREAFRLYDKEGNGYI 346
           +EL+EAF L DK+G+G I
Sbjct: 48  QELKEAFALLDKDGDGNI 65


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 287 MQKELREAFRLYDKEGNGYIPTSSLR 364
           M +E  EAF L+D    GYI    LR
Sbjct: 10  MDEEAEEAFDLFDVTHKGYIDFEDLR 35


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 363  ARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 470
            A ++G+ TSS  T +   SS  S  T +A  +STSS
Sbjct: 968  ASATGSSTSSIATASVSGSSTSSVATASATDSSTSS 1003



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 357  ACARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 470
            A A  +G+ TSS  T +   SS  S  T +A  +STSS
Sbjct: 1005 AAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSS 1042


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 179 LEELIEEVDADKSGRLEFPEFV 244
           + E I EV+ D SGR+E  +FV
Sbjct: 56  VREAIREVNVDSSGRVEPEDFV 77


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 233 PEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEG 334
           PEF   AA+ +VEED E +     EA  + D+EG
Sbjct: 38  PEFSDEAAEALVEEDIEDLD---GEALDVEDEEG 68


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 354 RACARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSSW 473
           R C   S +W SS +T   +  S+R  L       S + W
Sbjct: 59  RLCKLPSKSWVSSTVTNEKLRESRRLALQAYVQCLSETPW 98


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 76  AEDGDLXLGAAHRPSLRCPEPWLMS 2
           AEDG++ +   H P ++C +P ++S
Sbjct: 55  AEDGEMGILKDHVPMIQCLKPGVIS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,181
Number of Sequences: 5004
Number of extensions: 29790
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)