Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31831
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   1.6  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   5.0  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   5.0  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.8  

>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 356 GNNFNGVVILQKEVVNLLFSKLTILCVYIYLTHSANAKYSFRYVPAAFKTNRLEYRS 186
           GN   GV   ++E  ++LFS  ++L +++        ++SF      FK + L+YR+
Sbjct: 113 GNYIEGVYDSEEEAPHMLFSSSSLLSIFLRKCVVEYEQFSFEQGVQFFK-SFLQYRA 168


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 254 ANAKYSFRYVPAAFKTNRLEYRSLNETIST 165
           A  +YS + V  A K + ++Y  LNE + T
Sbjct: 839 AQLRYSIQNVAHAQKESEVKYNELNEQVKT 868


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 356 GNNFNGVVILQKEVVNLLFSKLTILCV 276
           G  F G  IL+  V N L   LT+LC+
Sbjct: 222 GGYFEGAGILRDVVQNHLLQLLTLLCI 248


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 238 LYFALAEWVKYIYTHKMVNFEKSKFTTSFCKITTPLKLF---P--NQHSNYLLCKIHTKI 402
           L+FAL     Y YT+ +   +  KF++    +    +L    P  + HSN L    H ++
Sbjct: 10  LFFALFIGNTYAYTYSLDRIQALKFSSESSNVDDGPRLHCKGPACSSHSNDLAICQHNQL 69

Query: 403 NI--HIFK 420
           N+  H+ K
Sbjct: 70  NVAPHLLK 77


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -3

Query: 405 IYFCMNFTEEIITVLIWE*FQWRSNFTKRSSKLAFFKINHFVCIYIFDPFGQCKI*LPLC 226
           IY   +F E +++   +E  QWR  F+K +S      I   +  +     G+ K    L 
Sbjct: 139 IYTVSSFIE-LLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGRNKAPSSL- 196

Query: 225 PSRL*N*STRISIF 184
           P  L N S +++IF
Sbjct: 197 PFALGNLSEKVTIF 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,493
Number of Sequences: 5004
Number of extensions: 34317
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)