Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31831
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    28   3.9  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 256 EWVKYIYTHKMVNFEKSKFTTSFCKIT 336
           +W   + T ++V F +S+ TT+FC+ T
Sbjct: 458 QWFLPMLTCRLVAFSRSRLTTTFCRST 484


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 274 YTHKMVNFEKSKFTTSFCKITTPLKLFPNQHSNYLLCKIHTKINI 408
           Y H  +N+      T     TT       ++S+Y LC +HT + I
Sbjct: 55  YAHYTLNYSYCTLLTPHAAHTTHYPSHIARYSHYTLCTLHTTLLI 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,204,184
Number of Sequences: 59808
Number of extensions: 219335
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)