Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31830
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    27   6.9  
SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)                        27   9.2  

>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 474 NICLGNFKINNEN*SPVAVRDVINVSVRILAGNL 373
           N+ + NF ++NE  SP    D++  S R+ +G L
Sbjct: 431 NLSISNFSLDNEYISPKDFNDILQFSNRMSSGIL 464


>SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)
          Length = 222

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 147 IVCMRVCVKYMVVCVMFF 94
           ++  +VCVKY  VCVM++
Sbjct: 70  VMYYKVCVKYYKVCVMYY 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,409
Number of Sequences: 59808
Number of extensions: 238958
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)