Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31828
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.6  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   2.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   4.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.8  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   6.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 301 QALHFLHQAHHRYRRHPLH 357
           Q+++  H  HH   +HP H
Sbjct: 160 QSMNNHHMGHHMQEQHPQH 178


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 301 QALHFLHQAHHRYRRHPLH 357
           Q+++  H  HH   +HP H
Sbjct: 162 QSMNNHHMGHHMQEQHPQH 180


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
 Frame = +2

Query: 128 RCVKCNKIITQGGVTYKNEPWH--RECFTCTNC------NTSLAGQRFTSRDEKPY-CAE 280
           RC+ CNK  +Q      +   H   + F C  C      ++S+     T   E+PY C  
Sbjct: 23  RCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRL 82

Query: 281 C 283
           C
Sbjct: 83  C 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
 Frame = +2

Query: 128 RCVKCNKIITQGGVTYKNEPWH--RECFTCTNC------NTSLAGQRFTSRDEKPY-CAE 280
           RC+ CNK  +Q      +   H   + F C  C      ++S+     T   E+PY C  
Sbjct: 279 RCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRL 338

Query: 281 C 283
           C
Sbjct: 339 C 339


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
 Frame = +2

Query: 203 FTCTNCNTS------LAGQRFTSRDEKPY-CAEC 283
           FTC  CN S      L     T   EKP+ C EC
Sbjct: 135 FTCEVCNRSFGYKHVLQNHERTHTGEKPFECQEC 168


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
 Frame = +2

Query: 203 FTCTNCNT------SLAGQRFTSRDEKPYCAECFGELFAKR 307
           F C  CN       +L     T  DE+PY  +  G+ F ++
Sbjct: 80  FICKYCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQ 120


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 218 CNTSLAGQRFTSRDE 262
           CN    G+RFT  DE
Sbjct: 347 CNWLFCGKRFTRSDE 361


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 394 HLRAVQDLARRQGLHHRRT 450
           HLR V D ++R+G +  RT
Sbjct: 350 HLRKVGDPSKRKGTYAFRT 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,821
Number of Sequences: 336
Number of extensions: 1843
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)