Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31828
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 42 1e-05
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 46 1e-05
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 37 3e-05
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 43 3e-05
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 45 3e-05
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 40 0.001
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 39 0.002
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 39 0.002
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 38 0.003
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 36 0.021
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 31 0.34
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 29 1.4
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 29 1.8
At4g32960.1 68417.m04689 expressed protein 29 1.8
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 3.1
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa... 28 4.2
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 27 7.3
At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot... 27 9.6
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 42.3 bits (95), Expect(2) = 1e-05
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 128 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 298
+C C+K + ++ + P+H+ CF CT+C +L ++S D YC F +LF
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
Score = 37.1 bits (82), Expect(2) = 1e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 304
+C C K + + + E +H+ CF C + +L + S D YC F +LF +
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFME 162
Query: 305 R 307
+
Sbjct: 163 K 163
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 305 RCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSL 421
+C C K + + +S E +H CF C CK +L
Sbjct: 9 KCNVCDKTVYVVD---MLSIEGMPYHKSCFRCTHCKGTL 44
Score = 25.0 bits (52), Expect(2) = 1e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +2
Query: 23 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 121
CF C CK + ++ + +YC +E F
Sbjct: 34 CFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
Score = 23.4 bits (48), Expect(2) = 1e-05
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 305 RCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPECAKQK 484
+C +C K + + I E +H CF CA +L + + + C Q
Sbjct: 103 KCAACEKTVYPL---EKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQL 159
Query: 485 LM 490
M
Sbjct: 160 FM 161
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 131 CVKCNKIITQGG-VTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAKR 307
C CN I G + N WH ECF C C+ ++ F++ P+ C+ E + +
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
Query: 308 CTSCT 322
C C+
Sbjct: 232 CDVCS 236
Score = 32.3 bits (70), Expect = 0.19
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +2
Query: 20 KCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIIT---QGGVTYKNEPW 190
+CF C C PI F + CY +++ +C C+ I G + Y+ P+
Sbjct: 195 ECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPTNHAGLIEYRAHPF 254
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 308 CTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPECAKQK 484
C C I G RF++ + WH +CF C C + F T G C +++
Sbjct: 172 CAGCNMEI---GHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRER 227
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 36.7 bits (81), Expect(2) = 3e-05
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 304
+C C+K + VT +++ +H+ CF C++ ++ + + + YC F +LF +
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKE 166
Query: 305 R 307
+
Sbjct: 167 K 167
Score = 35.1 bits (77), Expect = 0.027
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 188 WHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 298
+H+ CF CT+C + L ++S + YC F +LF
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 302 KRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSL 421
++C +C K + + +S + +H CF C CK+ L
Sbjct: 8 QKCKACEKTVYAV---ELLSADGVGYHKSCFKCTHCKSRL 44
Score = 27.9 bits (59), Expect(2) = 3e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 GSGTXK-CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 121
G G K CF C CK+ + S+ E +YC +E F
Sbjct: 27 GVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 128 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 298
+C C+K + +T + +H+ CF CT+C +L ++S D YC F +LF
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66
Score = 39.5 bits (88), Expect(2) = 3e-05
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 304
+C C K + VT + E +H+ CF CT+ L + S + YC F +LF +
Sbjct: 105 KCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLE 164
Query: 305 R 307
+
Sbjct: 165 K 165
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 305 RCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLV 424
+C +C K + + ++ E +H CF C CK +LV
Sbjct: 9 KCKACDKTVYVMD---LLTLEGNTYHKSCFRCTHCKGTLV 45
Score = 24.6 bits (51), Expect(2) = 3e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +2
Query: 23 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 121
CF C CK + ++ + +YC +E F
Sbjct: 34 CFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 128 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 298
+C C+K + +T + P+H+ CF C++CN +L ++S D YC F +LF
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLF 67
Score = 37.1 bits (82), Expect(2) = 0.002
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 304
+C C K + +T + E +H+ CF C + L + + D YC F +LF +
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLE 165
Query: 305 R 307
+
Sbjct: 166 K 166
Score = 20.6 bits (41), Expect(2) = 0.002
Identities = 8/33 (24%), Positives = 14/33 (42%)
Frame = +2
Query: 23 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 121
CF C C + ++ + +YC +E F
Sbjct: 35 CFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLF 67
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 188 WHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAKRCTSC 319
WH ECF C C+ + F+ +PY C+ E +C C
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVC 48
Score = 34.7 bits (76), Expect = 0.036
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 20 KCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII---TQGGVTYKNEPW 190
+CFCC C PI F Y CY+++ +C C+ I G + Y+ P+
Sbjct: 8 ECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRAHPF 67
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +2
Query: 377 WHNDCFICAQCKTSLVGKGFITDGQDIICPECAKQK 484
WH +CF C C ++ F G C K++
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQ 40
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = +2
Query: 131 CVKCNKIITQG-GVTYKNEPWHRECFTCTNCNTSLAGQRFTSRD--EKPYCAECFGEL-F 298
C C I G V WH ECF C C+ +A + ++ YC F E+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCP--FHEVDG 258
Query: 299 AKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQC 409
+C SC + GT+++ D W C C +C
Sbjct: 259 TPKCCSCER--LEPWGTKYVMLADNRWL--CVKCMEC 291
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Frame = +2
Query: 20 KCFCCVVCKNPIGTKSF--IPREQEIYCAGCYEDKFATRCVKCNKIITQGG--VTYKNEP 187
+CFCC C PI + P +E YC +E +C C ++ G V +
Sbjct: 224 ECFCCRYCDKPIAMHEYKEHPFWKEKYCP-FHEVDGTPKCCSCERLEPWGTKYVMLADNR 282
Query: 188 WHRECFTCTNC 220
W C C C
Sbjct: 283 W--LCVKCMEC 291
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 20 KCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII--TQGGVTYKNEPWH 193
+CFCC+ C+ PI I + +Y CY++ C C K I T G+ Y P+
Sbjct: 1263 QCFCCLRCREPIAMNE-ISDLRGMYHKPCYKELRHPNCYVCEKKIPRTAEGLKYHEHPFW 1321
Query: 194 RECF 205
E +
Sbjct: 1322 METY 1325
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +2
Query: 125 TRCVKCNKIITQG-GVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFA 301
++C C I G + WH +CF C C +A + Y C+ EL
Sbjct: 1238 SKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDL-RGMYHKPCYKELRH 1296
Query: 302 KRCTSCTKPI 331
C C K I
Sbjct: 1297 PNCYVCEKKI 1306
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 128 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 304
+C+ C+K + +T N +H+ CF C +C +L + S + YC F + F K
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF-K 67
Query: 305 RCTSCTKPITG 337
R S K G
Sbjct: 68 RTGSLEKSFEG 78
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 128 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYC 274
+CV C+K + V+ +H+ CF CT+ +++ + + + K YC
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYC 158
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 302 KRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSL 421
++C +C K + + ++ ++R +H CF C CK +L
Sbjct: 8 QKCMACDKTVYLVDK---LTADNRVYHKACFRCHHCKGTL 44
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 35.5 bits (78), Expect = 0.021
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 304
+C C K + VT +++ +H+ CF C++ ++ + + + YC F +LF +
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKE 167
Query: 305 R 307
+
Sbjct: 168 K 168
Score = 34.7 bits (76), Expect = 0.036
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +2
Query: 188 WHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGEL------FAKRCTSCTKPIT 334
+H+ CF C++C + L ++S + YC F +L F+K S KP+T
Sbjct: 30 YHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSPAKPLT 84
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 302 KRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSL 421
++C +C K + + +S + +H CF C+ CK+ L
Sbjct: 8 QKCRACEKTVYPV---ELLSADGISYHKACFKCSHCKSRL 44
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 200 CFTCTNCNTSLAGQRFTSRDEKPYCAECFGE--LFAKRCTSCTKPITG 337
C +C ++ ++E +C+ C E +F+K C SC K + G
Sbjct: 122 CLVIQDCRRDTQQEQSNEQEEALFCSLCNAEVRMFSKHCRSCGKCVDG 169
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +2
Query: 23 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF----ATRCVKCN 145
C C +C NP + I +C C +KF C CN
Sbjct: 13 CLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCN 57
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 131 CVKCNKIITQGG-VTYKNEPWHRECFTCTNCNTSLA 235
C CN + GG V WH CF C C+ +A
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIA 321
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 23 CFCCVVCKNPIG---TKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQGGVTYKNEPWH 193
CFCC C PI ++ + + + CYE C C + + TY N P+
Sbjct: 310 CFCCRACHKPIAIHDIENHVSNSRGKFHKSCYE----RYCYVCKE---KKMKTYNNHPFW 362
Query: 194 RE 199
E
Sbjct: 363 EE 364
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 6/125 (4%)
Frame = +2
Query: 131 CVKCNKIIT-QGGVTYKNEPWHRECFTCTNCNTSLA---GQRFTSRDEKPYCAECFGE-- 292
C CN + + V WH CF C +C+ +A + S + C+
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCYERYC 406
Query: 293 LFAKRCTSCTKPITGIGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPEC 472
K T I R+ + C C + + G ++DG+ +C EC
Sbjct: 407 YVCKEKKMKTYNIHPFWEERYCPVHEADGTPKCCSCERLEPRGTKYGKLSDGR-WLCLEC 465
Query: 473 AKQKL 487
K +
Sbjct: 466 GKSAM 470
>At4g32960.1 68417.m04689 expressed protein
Length = 264
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 329 ITGIGGTRFISFEDRHWHNDCFIC--AQCKTSLVGKGFITDGQDIICPECAKQKLM 490
+TG+G TR+ R D IC ++ + K T+G+ +I EC KQ ++
Sbjct: 8 VTGVGTTRYALKPGRIKSEDILICIDVDAESMVEMKTTGTNGRPLIRMECVKQAII 63
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -3
Query: 453 SCPSVMKPLPT-SEVLHCAQMKQSLCQCLSSNEMKRVPPIPVMGLVQEVQRLANSSPKHS 277
S P M P P S C+ + S+ CLS + P P V+ + N SPK
Sbjct: 28 SQPPSMAPTPQPSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCL 87
Query: 276 AQ*GFSSREV 247
SSRE+
Sbjct: 88 CSALESSREM 97
>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
family protein similar to inositol 1,4,5-trisphosphate
5-phosphatase (GI:4688596) [Arabidopsis thaliana]
Length = 861
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 304 ALHFLHQAHHRYRRHPLHLV-RRQTLAQRLLHLRAVQD 414
+L F H+ HH+ R+H L V R TLA ++ + D
Sbjct: 30 SLQFDHKPHHQIRKHSLDEVPRSATLASEAVYFDSSDD 67
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 359 SFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPECAKQKLM*IH 499
S+ D +H CF C + +V + CP C + L IH
Sbjct: 33 SYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSIIH 79
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +2
Query: 131 CVKCNKIITQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAE--CFGELFAK 304
C C + + + +HR+CF+C N + QR P C C EL +
Sbjct: 187 CCICRENTDADRMFFTENCFHRQCFSCVNRHV----QRMLLCGISPTCLHFPCNSELTFE 242
Query: 305 RCTSCTKP 328
C+ P
Sbjct: 243 SCSKVLTP 250
>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
contains Pfam profiles PF04937: Protein of unknown
function (DUF 659), PF05699 hAT family dimerisation
domain
Length = 761
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 107 YEDKFATRCVKCNKIITQGGVTYKNE 184
Y D+ RC+ C K+ GG+T E
Sbjct: 27 YGDRVQMRCLYCRKMFKGGGITRVKE 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,702,625
Number of Sequences: 28952
Number of extensions: 170870
Number of successful extensions: 621
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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